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The map label for this gene is hofQ [C]

Identifier: 86748907

GI number: 86748907

Start: 2045786

End: 2047225

Strand: Reverse

Name: hofQ [C]

Synonym: RPB_1784

Alternate gene names: 86748907

Gene position: 2047225-2045786 (Counterclockwise)

Preceding gene: 86748908

Following gene: 86748906

Centisome position: 38.4

GC content: 66.6

Gene sequence:

>1440_bases
ATGAGCTGCGGCACCAACCACCGATTCATCCGGACGCTGACGGGCACGGCGATGGCGGTCTCCGCCGTCGTCGCGCTGAC
GATGCTGCCGCCCTGGACGCCGGTGAAGGCCAGCGACTATCGCGCCACCACGACGCAGACCGGCGGCGGGATGAACGCGC
GGCCGCTCGCGCTCGGCATCGGCAAATCGGTGGTGATCGACCTGCCGCGCGACATCAAGGACGTCCTCGTCGCCGATCCG
AAGATCGCCAACGCCGTGGTGCGTTCGTCACAGCGCGCCTACATCATCGGCGCCGCCGTCGGCCAGACCAACATCGTGTT
CTTCGACTCCACCGGCCAGCAGATCGCCGCCTACGACATCGCGGTGACCCGCGATCTCAACGGCATCCGCGCCGCGCTGC
AGCAGTCGATCCCGAATGCCGACATTCGCGTCGAGGGCCTCGGCGACGGCGTGATCCTGATGGGTTCGGTGGCGACGCCG
ATCGAGGCGCAGCAGGCGGCCGATCTCGCCGCGCGGCTGGCCGGCGATGCCAGCAAGGTGGTCAACAACATCGCGATCCG
CGGCCGCGACCAGGTGATGCTGAAGATCACCGTCGCCGAAGTGCAACGCGACATCGTCAAGCAGCTCGGCGTCGATCTCA
CCGCCAATCTGAGCTACGGCACCTCGGTGGTGAGTTTCACCAACACCAATCCGTTCACGCAATCCGGCCAGGCGCTGGTC
TCGGGCAACGCCCTGACGACCTCGTTCGGCAACGGGCCGTCGATCACCGCGACGCTGAAGGCGATGGAAAGCGCCGGCGT
GGTGCGGACGCTGGCCGAACCGAACCTCACGGCGATTTCCGGCGAACCGGCGAGCTTCCTCGCCGGCGGCGAATTTCCGG
TGCCGAGCGGCGTGACCTGTACCAACGCCGTCTGCACGCCGTCGGTGAGCTACAAGAAATTCGGCGTCCTGCTCAACTTC
ACACCGGTGGTGCTGTCCGAAGGCCGCATCAGCCTGAAAGTCGCGACCGAAGTGTCCGAGGTCTCGAGCGACAATTCGGT
CACTATCAGCGGGACGACGGTGCCGTCGATCAAGACCCGCCGCGTCGACAGCACGGTGGAAATCCCCTCCGGCGGCTCGC
TGGCGATGGCCGGCCTGATCCAGGAACAGACCAAGCAGGCGATCAACGGCATGCCGGGCATGACGCAGATTCCCATTCTC
GGCACGCTGTTCCGCAGCCGCGACTACATCAACCGCCAGAGCGAGCTGATGGTGCTGGTGACGCCCTATGTGGTGCGCGC
CGTGGCGCCGAAGGATCTGTCGCGGCCCGACGACGGCTTCGCCGACGCCTCCGATCCGCAATCGGATCTGCTCGGCAGCA
TCAACCGAATCTATGGCGTCCCCGGCCGCACCGGCCAGAGCCAGACCTACCGGGGCCGGTTCGGCTTCATCACCGACTGA

Upstream 100 bases:

>100_bases
GCCCGCACCGAGGAGATCGGCGGCAAGCGCGACAGCATCAACGTGATTCGCTTCGGCGTTTCCACGCAAACGACGACGCC
GAAGTGATCAGGGGATCGAT

Downstream 100 bases:

>100_bases
GCGGGACGAGGACAGGACGATGACATCCAGCACACCCGCCCGCGCCATTCGCGGCCTCACCTGTGGGGCCGCTTTGGTCG
CCGTCTCGCTGTCGATGGGC

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MSCGTNHRFIRTLTGTAMAVSAVVALTMLPPWTPVKASDYRATTTQTGGGMNARPLALGIGKSVVIDLPRDIKDVLVADP
KIANAVVRSSQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDLNGIRAALQQSIPNADIRVEGLGDGVILMGSVATP
IEAQQAADLAARLAGDASKVVNNIAIRGRDQVMLKITVAEVQRDIVKQLGVDLTANLSYGTSVVSFTNTNPFTQSGQALV
SGNALTTSFGNGPSITATLKAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPSGVTCTNAVCTPSVSYKKFGVLLNF
TPVVLSEGRISLKVATEVSEVSSDNSVTISGTTVPSIKTRRVDSTVEIPSGGSLAMAGLIQEQTKQAINGMPGMTQIPIL
GTLFRSRDYINRQSELMVLVTPYVVRAVAPKDLSRPDDGFADASDPQSDLLGSINRIYGVPGRTGQSQTYRGRFGFITD

Sequences:

>Translated_479_residues
MSCGTNHRFIRTLTGTAMAVSAVVALTMLPPWTPVKASDYRATTTQTGGGMNARPLALGIGKSVVIDLPRDIKDVLVADP
KIANAVVRSSQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDLNGIRAALQQSIPNADIRVEGLGDGVILMGSVATP
IEAQQAADLAARLAGDASKVVNNIAIRGRDQVMLKITVAEVQRDIVKQLGVDLTANLSYGTSVVSFTNTNPFTQSGQALV
SGNALTTSFGNGPSITATLKAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPSGVTCTNAVCTPSVSYKKFGVLLNF
TPVVLSEGRISLKVATEVSEVSSDNSVTISGTTVPSIKTRRVDSTVEIPSGGSLAMAGLIQEQTKQAINGMPGMTQIPIL
GTLFRSRDYINRQSELMVLVTPYVVRAVAPKDLSRPDDGFADASDPQSDLLGSINRIYGVPGRTGQSQTYRGRFGFITD
>Mature_478_residues
SCGTNHRFIRTLTGTAMAVSAVVALTMLPPWTPVKASDYRATTTQTGGGMNARPLALGIGKSVVIDLPRDIKDVLVADPK
IANAVVRSSQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDLNGIRAALQQSIPNADIRVEGLGDGVILMGSVATPI
EAQQAADLAARLAGDASKVVNNIAIRGRDQVMLKITVAEVQRDIVKQLGVDLTANLSYGTSVVSFTNTNPFTQSGQALVS
GNALTTSFGNGPSITATLKAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPSGVTCTNAVCTPSVSYKKFGVLLNFT
PVVLSEGRISLKVATEVSEVSSDNSVTISGTTVPSIKTRRVDSTVEIPSGGSLAMAGLIQEQTKQAINGMPGMTQIPILG
TLFRSRDYINRQSELMVLVTPYVVRAVAPKDLSRPDDGFADASDPQSDLLGSINRIYGVPGRTGQSQTYRGRFGFITD

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=177, Percent_Identity=30.5084745762712, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI87082242, Length=268, Percent_Identity=27.6119402985075, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 50197; Mature: 50066

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCGTNHRFIRTLTGTAMAVSAVVALTMLPPWTPVKASDYRATTTQTGGGMNARPLALGI
CCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEC
GKSVVIDLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSTGQQIAAYDI
CCEEEEECCCCHHHHHHCCCHHHHHHHHCCCCEEEEEEECCCEEEEEECCCCCEEEEEEE
AVTRDLNGIRAALQQSIPNADIRVEGLGDGVILMGSVATPIEAQQAADLAARLAGDASKV
EEECCCHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHH
VNNIAIRGRDQVMLKITVAEVQRDIVKQLGVDLTANLSYGTSVVSFTNTNPFTQSGQALV
HHHHEECCCCEEEEEEEHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCCCCEEE
SGNALTTSFGNGPSITATLKAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPSGVTC
ECCEEEECCCCCCCEEHEEHHHHHCCCEEECCCCCEEEECCCCHHEECCCCCCCCCCCEE
TNAVCTPSVSYKKFGVLLNFTPVVLSEGRISLKVATEVSEVSSDNSVTISGTTVPSIKTR
CCCCCCCCCCHHHEEEEEECCEEEEECCEEEEEEEEEHHHCCCCCCEEEECCCCCCEEEE
RVDSTVEIPSGGSLAMAGLIQEQTKQAINGMPGMTQIPILGTLFRSRDYINRQSELMVLV
CCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHCCCCCCEEEEE
TPYVVRAVAPKDLSRPDDGFADASDPQSDLLGSINRIYGVPGRTGQSQTYRGRFGFITD
CHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SCGTNHRFIRTLTGTAMAVSAVVALTMLPPWTPVKASDYRATTTQTGGGMNARPLALGI
CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEC
GKSVVIDLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSTGQQIAAYDI
CCEEEEECCCCHHHHHHCCCHHHHHHHHCCCCEEEEEEECCCEEEEEECCCCCEEEEEEE
AVTRDLNGIRAALQQSIPNADIRVEGLGDGVILMGSVATPIEAQQAADLAARLAGDASKV
EEECCCHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHH
VNNIAIRGRDQVMLKITVAEVQRDIVKQLGVDLTANLSYGTSVVSFTNTNPFTQSGQALV
HHHHEECCCCEEEEEEEHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCCCCEEE
SGNALTTSFGNGPSITATLKAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPSGVTC
ECCEEEECCCCCCCEEHEEHHHHHCCCEEECCCCCEEEECCCCHHEECCCCCCCCCCCEE
TNAVCTPSVSYKKFGVLLNFTPVVLSEGRISLKVATEVSEVSSDNSVTISGTTVPSIKTR
CCCCCCCCCCHHHEEEEEECCEEEEECCEEEEEEEEEHHHCCCCCCEEEECCCCCCEEEE
RVDSTVEIPSGGSLAMAGLIQEQTKQAINGMPGMTQIPILGTLFRSRDYINRQSELMVLV
CCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHCCCCCCEEEEE
TPYVVRAVAPKDLSRPDDGFADASDPQSDLLGSINRIYGVPGRTGQSQTYRGRFGFITD
CHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]