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The map label for this gene is oprB [H]

Identifier: 86748858

GI number: 86748858

Start: 1981409

End: 1982758

Strand: Reverse

Name: oprB [H]

Synonym: RPB_1735

Alternate gene names: 86748858

Gene position: 1982758-1981409 (Counterclockwise)

Preceding gene: 86748859

Following gene: 86748856

Centisome position: 37.19

GC content: 67.26

Gene sequence:

>1350_bases
ATGCTTCCGATCATCACGAAAACGCCGCGGATAGCGGCCTGCGTGATCGCATTGCTGGGGCTGGGGCTGCACGCCACCAG
CAGCGTGGCGGAACCGGCCGGCGCGCCGGCCGCGGATCCACCCCGGGCGCTGGCCGATTGGGGTGTCCAGTTCAGCGCCA
CCTACATCGGCGAAACGCTGGCCGACGTGTCCGGTGGCATGAGACGCGGGACGATCTATGCGGGTCGTCTCGATCTCGGC
ACCACCGTCGATCTCGACCGGCTGTTCGGCTGGCACGGCGCGACCTTTCACGCCAACCTGTTTCAGATCCACGGCAACAA
TTTGTCGCGCAACTATGTCGGCAATCTGCTGCTGGTGAGCGGCATCGAATCGCTGCCGGCGACCCGGCTCTACGAGGCCT
GGATCGAACAATCGATGCTCGGCGGCGCGCTGTCCATCAAGGTCGGGCAGCAATCCGCCGACACCGAATTCGTCGACAGC
CGCTATCTCGACATGTTCGTCAACGCCGCCCTGGGCTGGCCCGGTCTCACCGGCGTCGTGCTGCCGAGCGGAGGGCCGTC
GCCGCCACTGGCGGTGCCGGGTGTCCGCATCAAGGCGCGGTTCGGCGACAAGCTCACCGCCTCGGTCGCGGTGTTCGACG
GCGATGCCGCGCCGCCCGGTCCCGGCGATCCGCAGAGCAGGAATCCGAACGGGTTGCTGTTTCGCGTGCACGACCCGGCC
TGGCTGATCGGACAAGTGAAATACGGTTTCGGCAATGGCAACGGAATGCCTTCCGGCATCACCGCCGGTGCCTGGTATCA
TTTCGGCACGTTCGACAGCCAGCGCTTCACCGCGCAGGGCTCCTCGGTCGCAGATCCCGCGGGCTCCGGGCTGCCGGCCA
GGCTGCGCGGCGATCAGGGCGTGTTCGCAGTCTACGAGCAGCCGCTGTCCCACAGCGCCGCCGATCCGGCCAAAGGCACC
GGCTTGGTCGCGCGCGTGCTGGCGAGCCCGTCGGACCGCAACCTGATCAGCTTCTATGTCGATGCGGCATTGCTGTTCAC
CGGCTTCAGCCCGTCGCGCCCGGACGACAAGTTCGGCGTGGCGATCAGTTACGCCCGGATCTCGGATGCGGCACGCGCGC
TCGATCGCGACGTGCGGCGCTGGAGCGGCATCGCGTCGCCGGTCCGCGACTTCGAGGCCGTGATCGAGCTGACCTATCTG
GCGCAAATCACCGGCAATTTCGCTGTCCAGCCGGTGATCGAATACGTGATGCATCCAGCCGGCGGCGCGACCGATCCGTT
CGATCCCGCCGGGACCAGGCGGATCAGGGACGCGGTGGTGCTCGGCATCCGCACCACGCTGAGCTACTGA

Upstream 100 bases:

>100_bases
GGCGACGGCGGGTTCGTCCTGGCGTTGCTGGCGATGGCGATGTCGTCGTTCGGGGCCTGGCTGTTGATGAAGCGTATCGG
CCTGATCAGGTAGCCAGGGC

Downstream 100 bases:

>100_bases
CCGGCCGCAGCCGATCCGGGCGACGGCGTCACGCCGCGAGTTGGTTCTCGACCAGTTTGATCCAGTACGAGGTGCCGTAG
ACGATGGCGTCGTCGTTGAA

Product: carbohydrate-selective porin OprB

Products: NA

Alternate protein names: Glucose porin; Outer membrane protein D1 [H]

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MLPIITKTPRIAACVIALLGLGLHATSSVAEPAGAPAADPPRALADWGVQFSATYIGETLADVSGGMRRGTIYAGRLDLG
TTVDLDRLFGWHGATFHANLFQIHGNNLSRNYVGNLLLVSGIESLPATRLYEAWIEQSMLGGALSIKVGQQSADTEFVDS
RYLDMFVNAALGWPGLTGVVLPSGGPSPPLAVPGVRIKARFGDKLTASVAVFDGDAAPPGPGDPQSRNPNGLLFRVHDPA
WLIGQVKYGFGNGNGMPSGITAGAWYHFGTFDSQRFTAQGSSVADPAGSGLPARLRGDQGVFAVYEQPLSHSAADPAKGT
GLVARVLASPSDRNLISFYVDAALLFTGFSPSRPDDKFGVAISYARISDAARALDRDVRRWSGIASPVRDFEAVIELTYL
AQITGNFAVQPVIEYVMHPAGGATDPFDPAGTRRIRDAVVLGIRTTLSY

Sequences:

>Translated_449_residues
MLPIITKTPRIAACVIALLGLGLHATSSVAEPAGAPAADPPRALADWGVQFSATYIGETLADVSGGMRRGTIYAGRLDLG
TTVDLDRLFGWHGATFHANLFQIHGNNLSRNYVGNLLLVSGIESLPATRLYEAWIEQSMLGGALSIKVGQQSADTEFVDS
RYLDMFVNAALGWPGLTGVVLPSGGPSPPLAVPGVRIKARFGDKLTASVAVFDGDAAPPGPGDPQSRNPNGLLFRVHDPA
WLIGQVKYGFGNGNGMPSGITAGAWYHFGTFDSQRFTAQGSSVADPAGSGLPARLRGDQGVFAVYEQPLSHSAADPAKGT
GLVARVLASPSDRNLISFYVDAALLFTGFSPSRPDDKFGVAISYARISDAARALDRDVRRWSGIASPVRDFEAVIELTYL
AQITGNFAVQPVIEYVMHPAGGATDPFDPAGTRRIRDAVVLGIRTTLSY
>Mature_449_residues
MLPIITKTPRIAACVIALLGLGLHATSSVAEPAGAPAADPPRALADWGVQFSATYIGETLADVSGGMRRGTIYAGRLDLG
TTVDLDRLFGWHGATFHANLFQIHGNNLSRNYVGNLLLVSGIESLPATRLYEAWIEQSMLGGALSIKVGQQSADTEFVDS
RYLDMFVNAALGWPGLTGVVLPSGGPSPPLAVPGVRIKARFGDKLTASVAVFDGDAAPPGPGDPQSRNPNGLLFRVHDPA
WLIGQVKYGFGNGNGMPSGITAGAWYHFGTFDSQRFTAQGSSVADPAGSGLPARLRGDQGVFAVYEQPLSHSAADPAKGT
GLVARVLASPSDRNLISFYVDAALLFTGFSPSRPDDKFGVAISYARISDAARALDRDVRRWSGIASPVRDFEAVIELTYL
AQITGNFAVQPVIEYVMHPAGGATDPFDPAGTRRIRDAVVLGIRTTLSY

Specific function: Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of gluc

COG id: COG3659

COG function: function code M; Carbohydrate-selective porin

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049 [H]

Pfam domain/function: PF04966 OprB [H]

EC number: NA

Molecular weight: Translated: 47393; Mature: 47393

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPIITKTPRIAACVIALLGLGLHATSSVAEPAGAPAADPPRALADWGVQFSATYIGETL
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEHHHHHHHH
ADVSGGMRRGTIYAGRLDLGTTVDLDRLFGWHGATFHANLFQIHGNNLSRNYVGNLLLVS
HHHCCCCCCCEEEEEEECCCCEECHHHHHCCCCCEEEEEEEEEECCCCCHHHHCCEEEEC
GIESLPATRLYEAWIEQSMLGGALSIKVGQQSADTEFVDSRYLDMFVNAALGWPGLTGVV
CHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
LPSGGPSPPLAVPGVRIKARFGDKLTASVAVFDGDAAPPGPGDPQSRNPNGLLFRVHDPA
ECCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCE
WLIGQVKYGFGNGNGMPSGITAGAWYHFGTFDSQRFTAQGSSVADPAGSGLPARLRGDQG
EEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCEEECCCCC
VFAVYEQPLSHSAADPAKGTGLVARVLASPSDRNLISFYVDAALLFTGFSPSRPDDKFGV
EEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCE
AISYARISDAARALDRDVRRWSGIASPVRDFEAVIELTYLAQITGNFAVQPVIEYVMHPA
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
GGATDPFDPAGTRRIRDAVVLGIRTTLSY
CCCCCCCCCCCHHHHHHHHEEEHHHHCCC
>Mature Secondary Structure
MLPIITKTPRIAACVIALLGLGLHATSSVAEPAGAPAADPPRALADWGVQFSATYIGETL
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEHHHHHHHH
ADVSGGMRRGTIYAGRLDLGTTVDLDRLFGWHGATFHANLFQIHGNNLSRNYVGNLLLVS
HHHCCCCCCCEEEEEEECCCCEECHHHHHCCCCCEEEEEEEEEECCCCCHHHHCCEEEEC
GIESLPATRLYEAWIEQSMLGGALSIKVGQQSADTEFVDSRYLDMFVNAALGWPGLTGVV
CHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
LPSGGPSPPLAVPGVRIKARFGDKLTASVAVFDGDAAPPGPGDPQSRNPNGLLFRVHDPA
ECCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCE
WLIGQVKYGFGNGNGMPSGITAGAWYHFGTFDSQRFTAQGSSVADPAGSGLPARLRGDQG
EEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCEEECCCCC
VFAVYEQPLSHSAADPAKGTGLVARVLASPSDRNLISFYVDAALLFTGFSPSRPDDKFGV
EEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCE
AISYARISDAARALDRDVRRWSGIASPVRDFEAVIELTYLAQITGNFAVQPVIEYVMHPA
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
GGATDPFDPAGTRRIRDAVVLGIRTTLSY
CCCCCCCCCCCHHHHHHHHEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8125108; 10984043; 2450582; 8132494; 7768797 [H]