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The map label for this gene is dppA [C]

Identifier: 86748166

GI number: 86748166

Start: 1196131

End: 1197747

Strand: Reverse

Name: dppA [C]

Synonym: RPB_1041

Alternate gene names: 86748166

Gene position: 1197747-1196131 (Counterclockwise)

Preceding gene: 86748167

Following gene: 86748165

Centisome position: 22.46

GC content: 65.12

Gene sequence:

>1617_bases
ATGGCCCTTTCGCGCTTCGAGATCAACCGCCGGACCGTCCTGCTGACGTCGGCCGCCATCGCCGCCAATGTGATCAATCC
GATGCGGGCGTTCGCGCAGGAAACGCCGCGCAAGGGCGGCGTGTTCAACGTTCATTACGGCGCCGAGCAGCGCCAGCTCA
ACCCCAGCTTGCAGGCCTCGACCGGCGTCTACATCATCGGCGGCAAGATCCAGGAGCCGCTGGTCGATCTCGACGCCGCC
GGCAATCCGGTCGGCGTGCTGGCCGAGAGCTGGGACTCGACGCCCGACGGCAAGACCATCACCTTCCGGCTGCGCAAGGG
CGTCACCTGGCACGACGGCAAGCCGTTCACCTCCGAGGACGTCGCCTTCACCGCGATGAACATGTGGAAGAAGATCCTCA
ATTACGGATCGACGCTGCAGCTGTTCCTGACCGCGGTCGACACCCCCGATCCGCAGACCGCGATCTTCCGCTACGAGCGG
CCGATGCCGCTGAACCTGCTGCTGCGCGCGCTGCCCGACCTCGGCTACATTTCGCCGAAGCACATCTACGAGACCGGCGA
CATCCGCCAGAACCCGGTCAATCTCGCGCCGATCGGCACCGGCCCGTTCAAGTTCAACAAATACGAGCGCGGCCAGTACA
TCATCGCCGACCGCAACGACAATTACTGGCGGCCGAACGCGCCCTATCTCGACCGCATCGTCTGGCGGGTGATCACCGAC
CGCGCCGCGGCGGCGGCCCAGCTCGAAGCCGGCAGCCTGCATCTCAGCCCGTTCTCGGGTCTCACGATCTCCGACATGGC
GCGGCTCGGCAAGGACAAGCGTTTCGTCGTCTCGACCAAGGGCAACGAGGGCAACGCCCGCACCAACACGCTGGAATTCA
ACTTCCGCCGCAAGGAGCTGTCGGACATCCGCGTCCGCAAGGCGATCGCGCACGCGATCAACGTGCCGTTCTTCATCGAG
AACTTCCTCGGCGATTTCGCCAAGCTCGGCACCGGGCCGATCCCCTCGACCTCGACCGACTTCTATCCGGGCCCGAACAC
GCCGCAATATCCGTACGACAAGAAGAAGGCGATCGCGCTGCTCGACGAGGCCGGGCTGAAGCCGGCCGCCGGCGGCAACC
GCCTCACGTTGCGGCTCTTGCCGGCGCCGTGGGGCGAGGACATCTCGCTGTGGGCGACCTTCATCCAGCAGTCGCTGGGC
GAAGTCGGCATCCAGGTCGAGGTGGTGCGCAACGACGGCGGCGGCTTCCTCAAGCAGGTCTATGACGAACACGCCTTCGA
CCTCGCCACCGGCTGGCATCAATATCGCAACGACCCCGCGGTCTCGACCACGGTGTGGTATCGCTCCGGCCAGCCCAAGG
GCGCGCCCTGGACCAATCAATGGGGCTGGAAGGACGAGGCGATCGACAAGATCATCGACGACGCCGCCACCGAGGTCGAT
CCGGTCAAGCGCAAGGCGCTGTATGCCGACTTCGTCACCCGCGCCAATGGCGAGCTGCCGCTGTGGATGCCGATTGAGCA
ATTGTTCGTCACGGTGATCAGCGCGAAGGCACGCAATGCCTCCAATAATCCACGCTGGGCGTCGTCGACCTGGCACGATC
TTTGGCTGGCCGAATAG

Upstream 100 bases:

>100_bases
CTTGCCGGAGCGGGCCGCCATTAGAAATGGCTTGATCGGCGGCGGTCTCGTATCGTCTTATGACTCGACCTCGCACTGCA
GCATCACTCCAGGAGACCGC

Downstream 100 bases:

>100_bases
CACCAACTCCGCCAAGATGATCGCATGCGTATCCTGAATCTTGCGGGGCGGCGACTCGCCGCCTCGATCCCGACCTTGCT
GCTGATCCTGATCGGCATCT

Product: extracellular solute-binding protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 538; Mature: 537

Protein sequence:

>538_residues
MALSRFEINRRTVLLTSAAIAANVINPMRAFAQETPRKGGVFNVHYGAEQRQLNPSLQASTGVYIIGGKIQEPLVDLDAA
GNPVGVLAESWDSTPDGKTITFRLRKGVTWHDGKPFTSEDVAFTAMNMWKKILNYGSTLQLFLTAVDTPDPQTAIFRYER
PMPLNLLLRALPDLGYISPKHIYETGDIRQNPVNLAPIGTGPFKFNKYERGQYIIADRNDNYWRPNAPYLDRIVWRVITD
RAAAAAQLEAGSLHLSPFSGLTISDMARLGKDKRFVVSTKGNEGNARTNTLEFNFRRKELSDIRVRKAIAHAINVPFFIE
NFLGDFAKLGTGPIPSTSTDFYPGPNTPQYPYDKKKAIALLDEAGLKPAAGGNRLTLRLLPAPWGEDISLWATFIQQSLG
EVGIQVEVVRNDGGGFLKQVYDEHAFDLATGWHQYRNDPAVSTTVWYRSGQPKGAPWTNQWGWKDEAIDKIIDDAATEVD
PVKRKALYADFVTRANGELPLWMPIEQLFVTVISAKARNASNNPRWASSTWHDLWLAE

Sequences:

>Translated_538_residues
MALSRFEINRRTVLLTSAAIAANVINPMRAFAQETPRKGGVFNVHYGAEQRQLNPSLQASTGVYIIGGKIQEPLVDLDAA
GNPVGVLAESWDSTPDGKTITFRLRKGVTWHDGKPFTSEDVAFTAMNMWKKILNYGSTLQLFLTAVDTPDPQTAIFRYER
PMPLNLLLRALPDLGYISPKHIYETGDIRQNPVNLAPIGTGPFKFNKYERGQYIIADRNDNYWRPNAPYLDRIVWRVITD
RAAAAAQLEAGSLHLSPFSGLTISDMARLGKDKRFVVSTKGNEGNARTNTLEFNFRRKELSDIRVRKAIAHAINVPFFIE
NFLGDFAKLGTGPIPSTSTDFYPGPNTPQYPYDKKKAIALLDEAGLKPAAGGNRLTLRLLPAPWGEDISLWATFIQQSLG
EVGIQVEVVRNDGGGFLKQVYDEHAFDLATGWHQYRNDPAVSTTVWYRSGQPKGAPWTNQWGWKDEAIDKIIDDAATEVD
PVKRKALYADFVTRANGELPLWMPIEQLFVTVISAKARNASNNPRWASSTWHDLWLAE
>Mature_537_residues
ALSRFEINRRTVLLTSAAIAANVINPMRAFAQETPRKGGVFNVHYGAEQRQLNPSLQASTGVYIIGGKIQEPLVDLDAAG
NPVGVLAESWDSTPDGKTITFRLRKGVTWHDGKPFTSEDVAFTAMNMWKKILNYGSTLQLFLTAVDTPDPQTAIFRYERP
MPLNLLLRALPDLGYISPKHIYETGDIRQNPVNLAPIGTGPFKFNKYERGQYIIADRNDNYWRPNAPYLDRIVWRVITDR
AAAAAQLEAGSLHLSPFSGLTISDMARLGKDKRFVVSTKGNEGNARTNTLEFNFRRKELSDIRVRKAIAHAINVPFFIEN
FLGDFAKLGTGPIPSTSTDFYPGPNTPQYPYDKKKAIALLDEAGLKPAAGGNRLTLRLLPAPWGEDISLWATFIQQSLGE
VGIQVEVVRNDGGGFLKQVYDEHAFDLATGWHQYRNDPAVSTTVWYRSGQPKGAPWTNQWGWKDEAIDKIIDDAATEVDP
VKRKALYADFVTRANGELPLWMPIEQLFVTVISAKARNASNNPRWASSTWHDLWLAE

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789966, Length=426, Percent_Identity=28.8732394366197, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1787052, Length=387, Percent_Identity=25.5813953488372, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI1789887, Length=488, Percent_Identity=27.4590163934426, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787762, Length=409, Percent_Identity=24.2053789731051, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787551, Length=524, Percent_Identity=23.8549618320611, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787495, Length=482, Percent_Identity=22.4066390041494, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081878, Length=393, Percent_Identity=23.9185750636132, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60091; Mature: 59960

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSRFEINRRTVLLTSAAIAANVINPMRAFAQETPRKGGVFNVHYGAEQRQLNPSLQAS
CCCCEEECCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCC
TGVYIIGGKIQEPLVDLDAAGNPVGVLAESWDSTPDGKTITFRLRKGVTWHDGKPFTSED
CCEEEECCCCCCCCEECCCCCCCCEEEECCCCCCCCCCEEEEEEECCCEECCCCCCCCCC
VAFTAMNMWKKILNYGSTLQLFLTAVDTPDPQTAIFRYERPMPLNLLLRALPDLGYISPK
HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCHH
HIYETGDIRQNPVNLAPIGTGPFKFNKYERGQYIIADRNDNYWRPNAPYLDRIVWRVITD
HEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
RAAAAAQLEAGSLHLSPFSGLTISDMARLGKDKRFVVSTKGNEGNARTNTLEFNFRRKEL
HHHHHHEECCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECHHHH
SDIRVRKAIAHAINVPFFIENFLGDFAKLGTGPIPSTSTDFYPGPNTPQYPYDKKKAIAL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEE
LDEAGLKPAAGGNRLTLRLLPAPWGEDISLWATFIQQSLGEVGIQVEVVRNDGGGFLKQV
HHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHH
YDEHAFDLATGWHQYRNDPAVSTTVWYRSGQPKGAPWTNQWGWKDEAIDKIIDDAATEVD
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
PVKRKALYADFVTRANGELPLWMPIEQLFVTVISAKARNASNNPRWASSTWHDLWLAE
HHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure 
ALSRFEINRRTVLLTSAAIAANVINPMRAFAQETPRKGGVFNVHYGAEQRQLNPSLQAS
CCCEEECCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCC
TGVYIIGGKIQEPLVDLDAAGNPVGVLAESWDSTPDGKTITFRLRKGVTWHDGKPFTSED
CCEEEECCCCCCCCEECCCCCCCCEEEECCCCCCCCCCEEEEEEECCCEECCCCCCCCCC
VAFTAMNMWKKILNYGSTLQLFLTAVDTPDPQTAIFRYERPMPLNLLLRALPDLGYISPK
HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCHH
HIYETGDIRQNPVNLAPIGTGPFKFNKYERGQYIIADRNDNYWRPNAPYLDRIVWRVITD
HEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
RAAAAAQLEAGSLHLSPFSGLTISDMARLGKDKRFVVSTKGNEGNARTNTLEFNFRRKEL
HHHHHHEECCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECHHHH
SDIRVRKAIAHAINVPFFIENFLGDFAKLGTGPIPSTSTDFYPGPNTPQYPYDKKKAIAL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEE
LDEAGLKPAAGGNRLTLRLLPAPWGEDISLWATFIQQSLGEVGIQVEVVRNDGGGFLKQV
HHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHH
YDEHAFDLATGWHQYRNDPAVSTTVWYRSGQPKGAPWTNQWGWKDEAIDKIIDDAATEVD
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
PVKRKALYADFVTRANGELPLWMPIEQLFVTVISAKARNASNNPRWASSTWHDLWLAE
HHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA