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The map label for this gene is appC [H]

Identifier: 86748164

GI number: 86748164

Start: 1194294

End: 1195124

Strand: Reverse

Name: appC [H]

Synonym: RPB_1039

Alternate gene names: 86748164

Gene position: 1195124-1194294 (Counterclockwise)

Preceding gene: 86748165

Following gene: 86748163

Centisome position: 22.42

GC content: 66.19

Gene sequence:

>831_bases
ATGGATGCGATCAAGCGTTACTTCCGCAGTCCCGCCGCGATCGTCGGCCTGCTGCTGTTGCTGGTGGTGATCGGCATGGC
GATCAGCGCCGGCTGGTTCTACCCGCGCGATCCGCTGTCGCTCGCCGGCCGGCCGCTGATCTGGCCGTTCAGCAATCCGC
GCTTTTTGCTCGGCACCGACAATTCCGGCCGCGACATCGCCGCGCAGATTTTCCACGGCGCGCGGATCGCGCTGCTGATC
GGCGGCGCGGCGACCGTGATCGCGGTGGTGATCGGCGTGCTGATCGGCGCCTTCGCCGGCTATTTCGGCGGCATCGTCGA
CACCGTGCTGATGCGCATCACCGAGGCGTTCCAGATCCTGCCGAACTTCGTTTTATTACTTGTGCTGGTCGCGGTGTTCG
GCTCGACGCTGACCACGGTGACGATTGCGGTCGGCATCGTGTCGTGGCCGGCGCCGGCGCGGCTGACGCGCGCCGAATTC
CTCAGCTTGCGCAATCGCGAATTCGTCCAGGCCGGCCGCACGCTGGGCATGAAGGATCTGCAACTGATCCTTGGCGAAAT
TCTGCCCAATGCGCTGCCGCCGGTGATCGTCTATGCCAGCGTGGTGATGGCGGTGGCGATCCTGCTGGAGAGCGCGCTGG
CGTTTCTGCGGCTGTCCGATCCCAACGTCGCCTCCTGGGGCAATCTGATCGGGCTCGGCCGCGACGTGCTGCGCGTGCAA
TGGTACGTCGCCGCGATCCCCGGCATCGCGATCCTGCTCACCGTGCTGGCGGTGTCGCTGGTCGGCCAGGGCCTCAACGA
CGCGCTCAACCCGAGGCTGAAGGGACGATGA

Upstream 100 bases:

>100_bases
ATCGTGTTCGTCTCGGCGCTCTTGGTGATCGCCGTCAACTTCCTGGTCGACCTCTTATATGCGCGGCTCGACCCGCGCAT
CACCGCCGGGACGTGACGTG

Downstream 100 bases:

>100_bases
CGGAGACCAAAGCCGCCGTCCTGACGCTCGACCGGCTCAACGTCCGCTTGCCCAAGGGTGCCGACAGGACGCACGCCGTG
CGCGACGCGTCGCTCACGAT

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MDAIKRYFRSPAAIVGLLLLLVVIGMAISAGWFYPRDPLSLAGRPLIWPFSNPRFLLGTDNSGRDIAAQIFHGARIALLI
GGAATVIAVVIGVLIGAFAGYFGGIVDTVLMRITEAFQILPNFVLLLVLVAVFGSTLTTVTIAVGIVSWPAPARLTRAEF
LSLRNREFVQAGRTLGMKDLQLILGEILPNALPPVIVYASVVMAVAILLESALAFLRLSDPNVASWGNLIGLGRDVLRVQ
WYVAAIPGIAILLTVLAVSLVGQGLNDALNPRLKGR

Sequences:

>Translated_276_residues
MDAIKRYFRSPAAIVGLLLLLVVIGMAISAGWFYPRDPLSLAGRPLIWPFSNPRFLLGTDNSGRDIAAQIFHGARIALLI
GGAATVIAVVIGVLIGAFAGYFGGIVDTVLMRITEAFQILPNFVLLLVLVAVFGSTLTTVTIAVGIVSWPAPARLTRAEF
LSLRNREFVQAGRTLGMKDLQLILGEILPNALPPVIVYASVVMAVAILLESALAFLRLSDPNVASWGNLIGLGRDVLRVQ
WYVAAIPGIAILLTVLAVSLVGQGLNDALNPRLKGR
>Mature_276_residues
MDAIKRYFRSPAAIVGLLLLLVVIGMAISAGWFYPRDPLSLAGRPLIWPFSNPRFLLGTDNSGRDIAAQIFHGARIALLI
GGAATVIAVVIGVLIGAFAGYFGGIVDTVLMRITEAFQILPNFVLLLVLVAVFGSTLTTVTIAVGIVSWPAPARLTRAEF
LSLRNREFVQAGRTLGMKDLQLILGEILPNALPPVIVYASVVMAVAILLESALAFLRLSDPNVASWGNLIGLGRDVLRVQ
WYVAAIPGIAILLTVLAVSLVGQGLNDALNPRLKGR

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=272, Percent_Identity=34.9264705882353, Blast_Score=157, Evalue=5e-40,
Organism=Escherichia coli, GI1787760, Length=268, Percent_Identity=34.3283582089552, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789964, Length=276, Percent_Identity=39.8550724637681, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1787498, Length=277, Percent_Identity=33.5740072202166, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1789889, Length=248, Percent_Identity=32.6612903225806, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1788505, Length=229, Percent_Identity=32.3144104803493, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787549, Length=275, Percent_Identity=28.7272727272727, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29429; Mature: 29429

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAIKRYFRSPAAIVGLLLLLVVIGMAISAGWFYPRDPLSLAGRPLIWPFSNPRFLLGTD
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEECCCCCEEEEECC
NSGRDIAAQIFHGARIALLIGGAATVIAVVIGVLIGAFAGYFGGIVDTVLMRITEAFQIL
CCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PNFVLLLVLVAVFGSTLTTVTIAVGIVSWPAPARLTRAEFLSLRNREFVQAGRTLGMKDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
QLILGEILPNALPPVIVYASVVMAVAILLESALAFLRLSDPNVASWGNLIGLGRDVLRVQ
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHH
WYVAAIPGIAILLTVLAVSLVGQGLNDALNPRLKGR
HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCC
>Mature Secondary Structure
MDAIKRYFRSPAAIVGLLLLLVVIGMAISAGWFYPRDPLSLAGRPLIWPFSNPRFLLGTD
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEECCCCCEEEEECC
NSGRDIAAQIFHGARIALLIGGAATVIAVVIGVLIGAFAGYFGGIVDTVLMRITEAFQIL
CCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PNFVLLLVLVAVFGSTLTTVTIAVGIVSWPAPARLTRAEFLSLRNREFVQAGRTLGMKDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
QLILGEILPNALPPVIVYASVVMAVAILLESALAFLRLSDPNVASWGNLIGLGRDVLRVQ
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHH
WYVAAIPGIAILLTVLAVSLVGQGLNDALNPRLKGR
HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]