Click here to switch to the map view.

The map label for this gene is 86748053

Identifier: 86748053

GI number: 86748053

Start: 1071097

End: 1072407

Strand: Reverse

Name: 86748053

Synonym: RPB_0928

Alternate gene names: NA

Gene position: 1072407-1071097 (Counterclockwise)

Preceding gene: 86748063

Following gene: 86748052

Centisome position: 20.11

GC content: 66.74

Gene sequence:

>1311_bases
ATGGCTTCGGACGAGTTCATCTCACGACGGCACTTCATGGGCCTCGTTTCGGGGGCGATCGCCGCCGCCGGCGTGGCCGG
TTCGGCGGCGGCGCAGCCGATCGCCACCAAGGCGCGCATCGTGATCATCGGTGCGGGCGCGGCCGGCACCGCGATCGCCA
ACCGGCTGGCGATGCGGCTGGAGCAGGCCAGCATCTTGATCATCGACGGCCGGCGCGACCACATCTACCAGCCCGGGCTG
TCATTGGTGGCGGCGGGACTGCGGCCCGCCTCCTATGTGGTGTCCCGCACCAGCGACTGGCTGCAACCCGGCGTCAAGCT
GATCGAAGAGCCGGCGGTGGCGATCGATCCGGTGGCCAAGACGGTCGCGACCGCCGCGCGCAACACCGTGCCGTACGATT
ATCTGATCGTCGCACCGGGGCTGGTGCTGGATCACGAGGCGATCGAGGGCTTCTCGCTCGATCTGGTCGGCAGTAACGGC
GTCGGCGCGTTGTATGCCGGCCCGGACTATGCGGCGCGGACCTGGGCGGCGGCGTCTCGCTTCACCGAGACCGGAGGTGT
GGGACTGTTCACCCGGCCGGCCACCGAAATGAAATGCGCCGGCGCGCCGCTCAAGCACACCTTCCTGATCGACGACATCG
CCAGCCGCAAGGTCGGCGCCGGCCGCTACAAGATCACCTATGCGGCGCATGCGGACTCGCTATTCAGCGTGCCGATCGTC
TCCGAAAAGGTCCGGATGCTGTTCGAAGAGCGCGGCATCAACGCCGTCTACAGCCGCGTCTTGAAGGCGATCGATCCGGG
CCGCAGGATCGCCACCTTCCAGACGCCGAAGGGGACAGAAGAGCTCGGCTACGACTACCTCCACGTGATTCCGCCGCAGC
GCGCCCCGGCGTTGATCCGGCAATCAGACCTGTCGTGGGCCGACAAATGGACCGACCAGGGCTGGGTCGAGGTCGATCAA
TACACGCTGCGCCACCGCCGCTATCCGGATGTCTTCGCGCTCGGCGACGTCGCCGGCGTTCCGAAGGGCAAGACGGCGGC
GTCGGTCAAATGGCAGGTCCCGGTCGTCGAGGATCATCTGATCGCGGCGATCAAGGGCAAGGAGGGGACCGAGCGCTTCA
ACGGCTACACCTCCTGCCCGCTGATGACGCGGGTCGGCCGCGCGATGCTGATCGAGTTCGACTATCGCAACAATCTGGCG
CCGTCGTTCCCCGGCCTGATCTCACCGCTCGAAGAGCTGTGGATCAGCTGGCTGATGAAGGAGGTCGCGTTGCGCGCCAC
CTACTATGCCATGCTGCGCGGCAAAGCCTGA

Upstream 100 bases:

>100_bases
TGACGCGCGAAGCACCTGTCCGACGAATCCCAAAGTCTGTTCGCCGGACGGCACGTCGCTTCGGAAATGATCGCCGCAAA
ACGGCGCAAGGGGGGTTGGC

Downstream 100 bases:

>100_bases
GGAGAACGACGATGAAGCAACTGAGTTTCGAGACTCTGATCGCGGTGTTCGAAGAACTGTACGGCGCGACGCTGTTCTGG
ACCCTGGTCGGAATCGCCGG

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Oxidoreductase; Pyridine Nucleotide-Disulphide Oxidoreductase; NAD(FAD)-Dependent Dehydrogenase; SulfideQuinone Oxidoreductase; Sulfide Dehydrogenase Flavoprotein Subunit; Twin-Arginine Translocation Pathway Signal; Fad-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Sulfide-Quinone Reductase; Flavoprotein Reductase; Sulfide Quinone Oxidoreductase-Like Protein; Flavoprotein Reductase Conjectural; Pyridine Nucleotide-Disulfide Oxidoreductase; Sulfide Dehydrogenase; Sulfide Dehydrogenase Flavoprotein; Anti-Anti-Sigma Regulatory Factor; Filamentous Hemagglutinin; NAD(Fad)-Dependent Dehydrogenase Protein; Oxidoreductase Family Protein; Flavoprotein Reductase-Like Protein; FAD-Dependent Pyridine Nucleotide-Disulphideoxido Reductase; Oxidoreductase Pyridine Nucleotide-Disulphide Family; Pyridine Nucleotide-Disulphide Oxidoreductase Class-II; Sulfide-Quinone Oxidoreductase; NADH Dehydrogenase FAD-Containing Subunit; Sulfide Quinone-Rductase; Sulphide Quinone Reductase; Oxidoreductase FAD-Dependent; Pyridine Nucleotide-Disulfide Family Oxidoreductase; Pyridine Nucleotide-Disulfide Oxidoreductase Family Protein; SulfideQuinone Reductase; Pyridine Nucleotide-Disulfide Oxidoreductase Family; NAD(FAD)-Dependent Dehydrogenase-Like Protein; Sulfide Dehydrogenase Related Protein

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MASDEFISRRHFMGLVSGAIAAAGVAGSAAAQPIATKARIVIIGAGAAGTAIANRLAMRLEQASILIIDGRRDHIYQPGL
SLVAAGLRPASYVVSRTSDWLQPGVKLIEEPAVAIDPVAKTVATAARNTVPYDYLIVAPGLVLDHEAIEGFSLDLVGSNG
VGALYAGPDYAARTWAAASRFTETGGVGLFTRPATEMKCAGAPLKHTFLIDDIASRKVGAGRYKITYAAHADSLFSVPIV
SEKVRMLFEERGINAVYSRVLKAIDPGRRIATFQTPKGTEELGYDYLHVIPPQRAPALIRQSDLSWADKWTDQGWVEVDQ
YTLRHRRYPDVFALGDVAGVPKGKTAASVKWQVPVVEDHLIAAIKGKEGTERFNGYTSCPLMTRVGRAMLIEFDYRNNLA
PSFPGLISPLEELWISWLMKEVALRATYYAMLRGKA

Sequences:

>Translated_436_residues
MASDEFISRRHFMGLVSGAIAAAGVAGSAAAQPIATKARIVIIGAGAAGTAIANRLAMRLEQASILIIDGRRDHIYQPGL
SLVAAGLRPASYVVSRTSDWLQPGVKLIEEPAVAIDPVAKTVATAARNTVPYDYLIVAPGLVLDHEAIEGFSLDLVGSNG
VGALYAGPDYAARTWAAASRFTETGGVGLFTRPATEMKCAGAPLKHTFLIDDIASRKVGAGRYKITYAAHADSLFSVPIV
SEKVRMLFEERGINAVYSRVLKAIDPGRRIATFQTPKGTEELGYDYLHVIPPQRAPALIRQSDLSWADKWTDQGWVEVDQ
YTLRHRRYPDVFALGDVAGVPKGKTAASVKWQVPVVEDHLIAAIKGKEGTERFNGYTSCPLMTRVGRAMLIEFDYRNNLA
PSFPGLISPLEELWISWLMKEVALRATYYAMLRGKA
>Mature_435_residues
ASDEFISRRHFMGLVSGAIAAAGVAGSAAAQPIATKARIVIIGAGAAGTAIANRLAMRLEQASILIIDGRRDHIYQPGLS
LVAAGLRPASYVVSRTSDWLQPGVKLIEEPAVAIDPVAKTVATAARNTVPYDYLIVAPGLVLDHEAIEGFSLDLVGSNGV
GALYAGPDYAARTWAAASRFTETGGVGLFTRPATEMKCAGAPLKHTFLIDDIASRKVGAGRYKITYAAHADSLFSVPIVS
EKVRMLFEERGINAVYSRVLKAIDPGRRIATFQTPKGTEELGYDYLHVIPPQRAPALIRQSDLSWADKWTDQGWVEVDQY
TLRHRRYPDVFALGDVAGVPKGKTAASVKWQVPVVEDHLIAAIKGKEGTERFNGYTSCPLMTRVGRAMLIEFDYRNNLAP
SFPGLISPLEELWISWLMKEVALRATYYAMLRGKA

Specific function: Unknown

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI10864011, Length=404, Percent_Identity=30.9405940594059, Blast_Score=194, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI17539680, Length=437, Percent_Identity=26.5446224256293, Blast_Score=159, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI115534373, Length=336, Percent_Identity=28.8690476190476, Blast_Score=140, Evalue=1e-33,
Organism=Drosophila melanogaster, GI24657386, Length=391, Percent_Identity=32.7365728900256, Blast_Score=187, Evalue=2e-47,
Organism=Drosophila melanogaster, GI24657391, Length=391, Percent_Identity=32.7365728900256, Blast_Score=187, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47255; Mature: 47124

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDEFISRRHFMGLVSGAIAAAGVAGSAAAQPIATKARIVIIGAGAAGTAIANRLAMRL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHH
EQASILIIDGRRDHIYQPGLSLVAAGLRPASYVVSRTSDWLQPGVKLIEEPAVAIDPVAK
CCCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHH
TVATAARNTVPYDYLIVAPGLVLDHEAIEGFSLDLVGSNGVGALYAGPDYAARTWAAASR
HHHHHHHCCCCCEEEEECCCEEEEHHHCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHH
FTETGGVGLFTRPATEMKCAGAPLKHTFLIDDIASRKVGAGRYKITYAAHADSLFSVPIV
HHCCCCCEEEECCCCHHEECCCCCCEEEEEHHHHHCCCCCCEEEEEEEECCCCEEECCHH
SEKVRMLFEERGINAVYSRVLKAIDPGRRIATFQTPKGTEELGYDYLHVIPPQRAPALIR
HHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCEEEECCCCCCCHHHH
QSDLSWADKWTDQGWVEVDQYTLRHRRYPDVFALGDVAGVPKGKTAASVKWQVPVVEDHL
HCCCCHHHHCCCCCCEEHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCE
IAAIKGKEGTERFNGYTSCPLMTRVGRAMLIEFDYRNNLAPSFPGLISPLEELWISWLMK
EEEEECCCCHHHHCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
EVALRATYYAMLRGKA
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ASDEFISRRHFMGLVSGAIAAAGVAGSAAAQPIATKARIVIIGAGAAGTAIANRLAMRL
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHH
EQASILIIDGRRDHIYQPGLSLVAAGLRPASYVVSRTSDWLQPGVKLIEEPAVAIDPVAK
CCCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHH
TVATAARNTVPYDYLIVAPGLVLDHEAIEGFSLDLVGSNGVGALYAGPDYAARTWAAASR
HHHHHHHCCCCCEEEEECCCEEEEHHHCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHH
FTETGGVGLFTRPATEMKCAGAPLKHTFLIDDIASRKVGAGRYKITYAAHADSLFSVPIV
HHCCCCCEEEECCCCHHEECCCCCCEEEEEHHHHHCCCCCCEEEEEEEECCCCEEECCHH
SEKVRMLFEERGINAVYSRVLKAIDPGRRIATFQTPKGTEELGYDYLHVIPPQRAPALIR
HHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCEEEECCCCCCCHHHH
QSDLSWADKWTDQGWVEVDQYTLRHRRYPDVFALGDVAGVPKGKTAASVKWQVPVVEDHL
HCCCCHHHHCCCCCCEEHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCE
IAAIKGKEGTERFNGYTSCPLMTRVGRAMLIEFDYRNNLAPSFPGLISPLEELWISWLMK
EEEEECCCCHHHHCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
EVALRATYYAMLRGKA
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA