Click here to switch to the map view.

The map label for this gene is 86748051

Identifier: 86748051

GI number: 86748051

Start: 1068814

End: 1070166

Strand: Reverse

Name: 86748051

Synonym: RPB_0926

Alternate gene names: NA

Gene position: 1070166-1068814 (Counterclockwise)

Preceding gene: 86748052

Following gene: 86748049

Centisome position: 20.07

GC content: 58.46

Gene sequence:

>1353_bases
ATGGCGGACACGAAGTATCTTCAAAAGAAAGGCAACACGTGGCGCGTGGTGGTTGAGATACCCAAGCCGCTCCGCGAGGC
CCTGCAAGGAAAGCCGCGCTTCATCAAATCCCTGGGCACGGAAAGCCTCAGCGAGGCTAACCGGATTAAGCACCAGCACG
TCGCCGAGTTCAAACGCCGTATCAAGCTCGCTGAGCAGGGCAAAGCAGACCCCCTCGCCGCAGCCATAGAGGCCGCCATT
GCCTTCCGAGAGGCCTTCGCTTCGCACGACAACGAATACCTTGTTCATGGCGACCAGGAGAGCACCGGAGCCGAAGAACT
CTTGGAGGTGGTGAACCAGGAGGCACAAGCCCTTTTGAAGACCCGAGGGCCTGAGGCATCGCGGCTGTTCCATAGTCTCG
CGACTGGCAAGGCCACGCTGATCCGGGACCAGTACCCAACTTGGCTCGCCATCTGCAACGGCACCGAGCAAACCAAGGCT
CAGCATGAAGCCACCATCAAGCGCTTCCTCGCTTGGGCCGGTGAGTTCATGTCGATCGAAGGCACCGACCGCAAGAAGGC
AGGGGAATACGTCCAAGTCCTCAGGGACGCAAAACTAGCGGCCAAGACAATCCAGCGGCACCTGTCGTCTTTAGCCACGC
TGTGGTCTTGGTTGACGAGCAGAGGGCTCACAAGCACTTCCGAACGCGACAATCCATGGAGAGGACATGGAGTCGGGAAA
ACACCGCGTGGCACCAAGAAGAAGTCGACGCGAACGGGATTGAGCAACGAGAAGCTCCTAAAGCTCCTGAGAGGCCGTTA
CAGCACGCCACGATATGCAACGATCCTCGCAGACCTCACAAGGCTTGCCCTACTCCATGGCAGCCGCCTGGACGAGCTTT
GCGCGCTCAAGAAAGCCGACATTCAGAAGATAGACGGCGACTACTGGTTCCAAATCACCGAAGGCAAGACCGAGGCGGCT
GTGCGCAGGGTGCCGCTCCATCCCCTCGCCGTCCCAATCATTGAGCGGCGACTGAAGGGACCAGGGAAGGAATACCTGTT
TGATGGTTTGGTGCCAGGCGGTCCTGACCGCAAACGTTCATGGAACGCTAGTAAAGCCTACGGCCGGTTCCGAAAAGACG
TAGGGGTTGCGGCGCGCTATGAGGACTTCCACGCTCTCCGAAAAACGTTTGCCGACCTCATGGAGGGCCTTGAGGTCCCC
GAGCGGACCGTGCAGTTGATCATCGGTCACGAGCGAGGCTTTACCTATGGAGACTATTCGAGCGGACAGCGTGTAAACCT
CCGCAAGATCATCAATCAGGTAGATTATGGTTCTGAGGTCATGGCAGCAATCGCCCTGCCCGCCCCCGAATAA

Upstream 100 bases:

>100_bases
GAGAGTGGGAACCTCCCCCAAGAACCTCTAAAGCCCAATAACCCCTTGTTTAACACGCCTTCTGAGGATAGCAAGGTGTG
GTTTACAGGTGTGGTTTGGC

Downstream 100 bases:

>100_bases
TCGGCGCTGTCAAAGCCATCCTCGGGAGGGCCGAAAGCGGCGCAAGGGTCGAAGACTTCGGGAAGCTTGATCACGCGCAC
AGCATCCGGCCACAAACTTA

Product: Phage integrase

Products: NA

Alternate protein names: Phage Integrase; Integrase; Site-Specific Recombinase Phage Integrase Family; Site-Specific Recombinase XerD; Phage Integrase Family Protein

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MADTKYLQKKGNTWRVVVEIPKPLREALQGKPRFIKSLGTESLSEANRIKHQHVAEFKRRIKLAEQGKADPLAAAIEAAI
AFREAFASHDNEYLVHGDQESTGAEELLEVVNQEAQALLKTRGPEASRLFHSLATGKATLIRDQYPTWLAICNGTEQTKA
QHEATIKRFLAWAGEFMSIEGTDRKKAGEYVQVLRDAKLAAKTIQRHLSSLATLWSWLTSRGLTSTSERDNPWRGHGVGK
TPRGTKKKSTRTGLSNEKLLKLLRGRYSTPRYATILADLTRLALLHGSRLDELCALKKADIQKIDGDYWFQITEGKTEAA
VRRVPLHPLAVPIIERRLKGPGKEYLFDGLVPGGPDRKRSWNASKAYGRFRKDVGVAARYEDFHALRKTFADLMEGLEVP
ERTVQLIIGHERGFTYGDYSSGQRVNLRKIINQVDYGSEVMAAIALPAPE

Sequences:

>Translated_450_residues
MADTKYLQKKGNTWRVVVEIPKPLREALQGKPRFIKSLGTESLSEANRIKHQHVAEFKRRIKLAEQGKADPLAAAIEAAI
AFREAFASHDNEYLVHGDQESTGAEELLEVVNQEAQALLKTRGPEASRLFHSLATGKATLIRDQYPTWLAICNGTEQTKA
QHEATIKRFLAWAGEFMSIEGTDRKKAGEYVQVLRDAKLAAKTIQRHLSSLATLWSWLTSRGLTSTSERDNPWRGHGVGK
TPRGTKKKSTRTGLSNEKLLKLLRGRYSTPRYATILADLTRLALLHGSRLDELCALKKADIQKIDGDYWFQITEGKTEAA
VRRVPLHPLAVPIIERRLKGPGKEYLFDGLVPGGPDRKRSWNASKAYGRFRKDVGVAARYEDFHALRKTFADLMEGLEVP
ERTVQLIIGHERGFTYGDYSSGQRVNLRKIINQVDYGSEVMAAIALPAPE
>Mature_449_residues
ADTKYLQKKGNTWRVVVEIPKPLREALQGKPRFIKSLGTESLSEANRIKHQHVAEFKRRIKLAEQGKADPLAAAIEAAIA
FREAFASHDNEYLVHGDQESTGAEELLEVVNQEAQALLKTRGPEASRLFHSLATGKATLIRDQYPTWLAICNGTEQTKAQ
HEATIKRFLAWAGEFMSIEGTDRKKAGEYVQVLRDAKLAAKTIQRHLSSLATLWSWLTSRGLTSTSERDNPWRGHGVGKT
PRGTKKKSTRTGLSNEKLLKLLRGRYSTPRYATILADLTRLALLHGSRLDELCALKKADIQKIDGDYWFQITEGKTEAAV
RRVPLHPLAVPIIERRLKGPGKEYLFDGLVPGGPDRKRSWNASKAYGRFRKDVGVAARYEDFHALRKTFADLMEGLEVPE
RTVQLIIGHERGFTYGDYSSGQRVNLRKIINQVDYGSEVMAAIALPAPE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50446; Mature: 50315

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTKYLQKKGNTWRVVVEIPKPLREALQGKPRFIKSLGTESLSEANRIKHQHVAEFKRR
CCCCHHHHHCCCEEEEEEECCHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
IKLAEQGKADPLAAAIEAAIAFREAFASHDNEYLVHGDQESTGAEELLEVVNQEAQALLK
HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
TRGPEASRLFHSLATGKATLIRDQYPTWLAICNGTEQTKAQHEATIKRFLAWAGEFMSIE
HCCCHHHHHHHHHHCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEC
GTDRKKAGEYVQVLRDAKLAAKTIQRHLSSLATLWSWLTSRGLTSTSERDNPWRGHGVGK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
TPRGTKKKSTRTGLSNEKLLKLLRGRYSTPRYATILADLTRLALLHGSRLDELCALKKAD
CCCCCCCCHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IQKIDGDYWFQITEGKTEAAVRRVPLHPLAVPIIERRLKGPGKEYLFDGLVPGGPDRKRS
HHHCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCC
WNASKAYGRFRKDVGVAARYEDFHALRKTFADLMEGLEVPERTVQLIIGHERGFTYGDYS
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEECCCCCCCCCCC
SGQRVNLRKIINQVDYGSEVMAAIALPAPE
CCCEEHHHHHHHHHCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
ADTKYLQKKGNTWRVVVEIPKPLREALQGKPRFIKSLGTESLSEANRIKHQHVAEFKRR
CCCHHHHHCCCEEEEEEECCHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
IKLAEQGKADPLAAAIEAAIAFREAFASHDNEYLVHGDQESTGAEELLEVVNQEAQALLK
HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
TRGPEASRLFHSLATGKATLIRDQYPTWLAICNGTEQTKAQHEATIKRFLAWAGEFMSIE
HCCCHHHHHHHHHHCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEC
GTDRKKAGEYVQVLRDAKLAAKTIQRHLSSLATLWSWLTSRGLTSTSERDNPWRGHGVGK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
TPRGTKKKSTRTGLSNEKLLKLLRGRYSTPRYATILADLTRLALLHGSRLDELCALKKAD
CCCCCCCCHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IQKIDGDYWFQITEGKTEAAVRRVPLHPLAVPIIERRLKGPGKEYLFDGLVPGGPDRKRS
HHHCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCC
WNASKAYGRFRKDVGVAARYEDFHALRKTFADLMEGLEVPERTVQLIIGHERGFTYGDYS
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEECCCCCCCCCCC
SGQRVNLRKIINQVDYGSEVMAAIALPAPE
CCCEEHHHHHHHHHCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA