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The map label for this gene is tnpR [H]

Identifier: 86748049

GI number: 86748049

Start: 1066658

End: 1067362

Strand: Reverse

Name: tnpR [H]

Synonym: RPB_0923

Alternate gene names: 86748049

Gene position: 1067362-1066658 (Counterclockwise)

Preceding gene: 86748051

Following gene: 86748046

Centisome position: 20.02

GC content: 64.54

Gene sequence:

>705_bases
ATGGCTTCCGGGAAGTTCGTCTCTTACCTCCGCGTTTCGACGGACAAGCAGGGCAAGAGCGGCCTCGGGATCGAAGCGCA
GCGCGAAGCCGTGACCAGCTACCTTAACGGTGGACGCTGGACCCTGGAGGCGGAATACGTGGAGACCGAGAGCGGCCGGA
AATCGGACAGGCCGAAGCTAGCCGCAGCGCTCTCCCACGCCAAAGCCATCGGAGCGCGGCTTGTCTTTGCCAAGCTCGAC
CGCCTCACCAGAAACGTGGACCTCCTGCGCTCCCTGGTGGCCAGCGAGGTCGAGCTTGTCTTTTGTGATTTGCCGACCGT
GCCCCCCGGCCCAATGGGCAAGTTCCTGCTGACCCAAATGGCAGCAGTTGCCGAGCTTGAGGCGGGCTTGATCAGCGAGA
GGACCAAGAAGGCCCTCGCAGCCGCCAAGGCGCGCGGTGTGAAGCTGGGCAACCCCAACGGTGCAAGAGCCCTCAGAGGC
AAGCAGAGGGGCAATGCTGAGGCGGTGGCTAGGATCAAGCAGAAGGCCGCGCAGCGCGCTACGGACCTTCGTGGCATCAT
TCAGAGCTTCCAGCGCTCAGGCATCACCAGCGTCCGCGCCATCACCGACGAACTCAACCGGCAAGGCATCCGCGCGCCTC
GTGGGGGCGACTGGCACCCCACAGCCGTTGCTAGGCTGCTCAATCGCCTTCCCAAGGCCGCCTAG

Upstream 100 bases:

>100_bases
ATGCAAAACGGAATCCCTGCGATTCCCAAATGCAAGTTCTCCTTGTGCACAAAACGATCTACCGTTCGTAGCGTCAAAAT
GTGCAAAGAGGAATATTGTC

Downstream 100 bases:

>100_bases
GGCTATTCGAGAGGAGAACACCACCATGCTAATCCAAGTTGCTGCGCTCGCCTTGATTGCTTCGGCTGTGATCCAAAGCC
GCCCCATGATCGTTGGCAGC

Product: resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MASGKFVSYLRVSTDKQGKSGLGIEAQREAVTSYLNGGRWTLEAEYVETESGRKSDRPKLAAALSHAKAIGARLVFAKLD
RLTRNVDLLRSLVASEVELVFCDLPTVPPGPMGKFLLTQMAAVAELEAGLISERTKKALAAAKARGVKLGNPNGARALRG
KQRGNAEAVARIKQKAAQRATDLRGIIQSFQRSGITSVRAITDELNRQGIRAPRGGDWHPTAVARLLNRLPKAA

Sequences:

>Translated_234_residues
MASGKFVSYLRVSTDKQGKSGLGIEAQREAVTSYLNGGRWTLEAEYVETESGRKSDRPKLAAALSHAKAIGARLVFAKLD
RLTRNVDLLRSLVASEVELVFCDLPTVPPGPMGKFLLTQMAAVAELEAGLISERTKKALAAAKARGVKLGNPNGARALRG
KQRGNAEAVARIKQKAAQRATDLRGIIQSFQRSGITSVRAITDELNRQGIRAPRGGDWHPTAVARLLNRLPKAA
>Mature_233_residues
ASGKFVSYLRVSTDKQGKSGLGIEAQREAVTSYLNGGRWTLEAEYVETESGRKSDRPKLAAALSHAKAIGARLVFAKLDR
LTRNVDLLRSLVASEVELVFCDLPTVPPGPMGKFLLTQMAAVAELEAGLISERTKKALAAAKARGVKLGNPNGARALRGK
QRGNAEAVARIKQKAAQRATDLRGIIQSFQRSGITSVRAITDELNRQGIRAPRGGDWHPTAVARLLNRLPKAA

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 25177; Mature: 25046

Theoretical pI: Translated: 11.36; Mature: 11.36

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASGKFVSYLRVSTDKQGKSGLGIEAQREAVTSYLNGGRWTLEAEYVETESGRKSDRPKL
CCCCCEEHHEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHEEECCCCCCCCCHHH
AAALSHAKAIGARLVFAKLDRLTRNVDLLRSLVASEVELVFCDLPTVPPGPMGKFLLTQM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHH
AAVAELEAGLISERTKKALAAAKARGVKLGNPNGARALRGKQRGNAEAVARIKQKAAQRA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHH
TDLRGIIQSFQRSGITSVRAITDELNRQGIRAPRGGDWHPTAVARLLNRLPKAA
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ASGKFVSYLRVSTDKQGKSGLGIEAQREAVTSYLNGGRWTLEAEYVETESGRKSDRPKL
CCCCEEHHEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHEEECCCCCCCCCHHH
AAALSHAKAIGARLVFAKLDRLTRNVDLLRSLVASEVELVFCDLPTVPPGPMGKFLLTQM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHH
AAVAELEAGLISERTKKALAAAKARGVKLGNPNGARALRGKQRGNAEAVARIKQKAAQRA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHH
TDLRGIIQSFQRSGITSVRAITDELNRQGIRAPRGGDWHPTAVARLLNRLPKAA
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2992807; 6312271; 3029727 [H]