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The map label for this gene is 86748023

Identifier: 86748023

GI number: 86748023

Start: 1032272

End: 1033897

Strand: Reverse

Name: 86748023

Synonym: RPB_0897

Alternate gene names: NA

Gene position: 1033897-1032272 (Counterclockwise)

Preceding gene: 86748024

Following gene: 86748022

Centisome position: 19.39

GC content: 67.96

Gene sequence:

>1626_bases
ATGAAGATCCGCATCGCGTTGCTCGTCCTCCTCACGCTGCTGACGGCGCCGGCGACCCGATCGAATGCCGCGGACGATCG
CGGCGGGCGCGTCGCGCTGGTGATCGGCAACGCCAAATATCCCGACTCCGAGAAGCCGCTCAAACAGCCGGTCAACGATG
CGCGCGAACTGGCCGACGAGTTGAAGCGCGACGGCTTCGACGTCGATGTCGGCGAGAATCTCGGCGGCGATGCGATGCGG
CGCGCCTTCGACCGGCTGTACAATCGCGTCAAGCCGGGTTCGGTCGCGCTGGTGTTCTTCAGCGGCTTCGGCATCCAGTC
CGGACGGCAGAGCTACATGATCCCGGTCGACGCCCAGATCTGGACCGAGCCGGACGTCCGCCGCGACGGCATCGGCCTCG
AGACCGTGCTCGGCGAGCTCAACAGCCGCGGCGCCACCGTCAAGATCGCGCTGATCGACGCGTCGCGCCGCAATCCGTTC
GAACGCCGGTTCCGCAGCTTCTCGGCCGGCCTCGCCCCGATCATCGCGCCCGGCGGTTCGCTGGTGATGTACTCCGCCGC
ACTGAGTTCAGTCGTGAGTGACAATGGCGGCGATCGCAGCCTGTTCGTCAGCGAACTGCTCAAGGAAATCCGCGTGCCGG
GGCTCGGCGCCGAGGAAGCGCTCAACCGCACCCGCGTCGGCGTCACCCGGGCGTCGCGCAGCGAACAGGTGCCGTGGATC
TCGTCGTCCCTGGCGGAGGATTTCGCCTTCGTGCCCGCGGCCGCCACGGCCGCGAGCGACAGCGCGCCGAAGCCCGCCGC
GACCGCCGCGCCCGCGACCAGCCCGATCGTCGATCGCACCCCGCCGGAGGCGCCGGCCGCCCCCAAGCCGGTCGAGGCCA
AACCCGCCGAAATCAAGCCTGCCGAAACCAAGCCGGCCCCGACGCCACCCGTCGCAGCCGCGGAGCCCAAGCCCGCGCCG
CTACCGGCCGCCGCGCCCGACAAGCCGGCCGAACTCGCCAAGCAGATCGAGCTGCCGAAGCCGATCGACGTGCCGAAGGA
ACTGCCCAAGGAGCTGTCGAAGGAGCTCGGCACCAAGGTCGAGCCCGCCGATCCCAAGCAGAACGACGACAAGATCAGGC
TGGCGCTGCGCGACGACCCGACGGTGCAGAGCCTGAACAAGCGGATCGACGACAATCCGGCGGACGCCAACGCGCTGTAT
CGCCGCGGCCAGGTCTATGCCAGCAAGGGCGCCTATTGGTCGGCGATCAAGGATTTCGACGAGGCGCTCCGGCTCAACCC
GCGCGACGTCGAGGCCTACAACAATCGCTGCTGGGTGCGCACTGTCGTCGATGAACTGACCGCAGCGCTCAAGGACTGCA
ACGAGGCGCTGCGGCTGCGTCCGAATTTCGTCGACGCGCTGGACAGTCGCGGCCTGCTCAACCTCAAGAACGGCCAGAAC
AAGAACGCGATCGCCGATTTCGACGCGGCGCTCAAGATCAATCCGCGGTTGACGTCGTCGCTGTATGGCCGCGGCCTCGC
CCGGCAGCGCGCCGGGATGAAATCCGAAGGCGAGATCGATATCACCACCGCCAAGGGGATGGACCCCAACATCGTGAAGG
AGTTCGACAGCTACGGGGTGCGCTGA

Upstream 100 bases:

>100_bases
TGGCGACCGGCACGGTTTGATACTATGAAGACCACTGATTGAAGTCAGGTCGCCGTCCGGCTCCGGCTGGATCGGCGCCC
CATCTCAGGACCGGGGTTGA

Downstream 100 bases:

>100_bases
GTGCGACGCACCGCCTCAGCGGCGTGTTGAACCTTCTCCGCCCCGGCAGCGACGATTGATCGAGACGGATTTTGATAGAC
CTCAACCGTGTTGCAGAGAT

Product: peptidase C14, caspase catalytic subunit p20

Products: NA

Alternate protein names: TPR Repeat-Containing Protein; Tetratricopeptide Repeat Domain Protein; TPR Domain-Containing Protein; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; TPR Repeat-Containing Serine/Threonin Protein Kinase; Caspase Domain Protein; O-Linked GlcNAc Transferase; TPR Repeat-Containing ; Tetratricopeptide TPR_1 Repeat-Containing Protein; Caspase-Like Domain- And TPR Repeat-Containing Peptidase; Peptidase C; Caspase-Like Domain-Containing Protein; Peptidase Protein; Caspase Domain-Containing Protein; TPR Repeat-Containing Caspace; Tetratricopeptide Repeat Family Protein; TPR Domain Protein; GUN4-Like Family; Caspase; Pentapeptide Repeat-Containing Serine/Threonine Kinase; Mitochondrial Outer Membrane; Peptidylprolyl Isomerase; Periplasmic Protein; Caspase-1 P; ICE-Like Protease

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MKIRIALLVLLTLLTAPATRSNAADDRGGRVALVIGNAKYPDSEKPLKQPVNDARELADELKRDGFDVDVGENLGGDAMR
RAFDRLYNRVKPGSVALVFFSGFGIQSGRQSYMIPVDAQIWTEPDVRRDGIGLETVLGELNSRGATVKIALIDASRRNPF
ERRFRSFSAGLAPIIAPGGSLVMYSAALSSVVSDNGGDRSLFVSELLKEIRVPGLGAEEALNRTRVGVTRASRSEQVPWI
SSSLAEDFAFVPAAATAASDSAPKPAATAAPATSPIVDRTPPEAPAAPKPVEAKPAEIKPAETKPAPTPPVAAAEPKPAP
LPAAAPDKPAELAKQIELPKPIDVPKELPKELSKELGTKVEPADPKQNDDKIRLALRDDPTVQSLNKRIDDNPADANALY
RRGQVYASKGAYWSAIKDFDEALRLNPRDVEAYNNRCWVRTVVDELTAALKDCNEALRLRPNFVDALDSRGLLNLKNGQN
KNAIADFDAALKINPRLTSSLYGRGLARQRAGMKSEGEIDITTAKGMDPNIVKEFDSYGVR

Sequences:

>Translated_541_residues
MKIRIALLVLLTLLTAPATRSNAADDRGGRVALVIGNAKYPDSEKPLKQPVNDARELADELKRDGFDVDVGENLGGDAMR
RAFDRLYNRVKPGSVALVFFSGFGIQSGRQSYMIPVDAQIWTEPDVRRDGIGLETVLGELNSRGATVKIALIDASRRNPF
ERRFRSFSAGLAPIIAPGGSLVMYSAALSSVVSDNGGDRSLFVSELLKEIRVPGLGAEEALNRTRVGVTRASRSEQVPWI
SSSLAEDFAFVPAAATAASDSAPKPAATAAPATSPIVDRTPPEAPAAPKPVEAKPAEIKPAETKPAPTPPVAAAEPKPAP
LPAAAPDKPAELAKQIELPKPIDVPKELPKELSKELGTKVEPADPKQNDDKIRLALRDDPTVQSLNKRIDDNPADANALY
RRGQVYASKGAYWSAIKDFDEALRLNPRDVEAYNNRCWVRTVVDELTAALKDCNEALRLRPNFVDALDSRGLLNLKNGQN
KNAIADFDAALKINPRLTSSLYGRGLARQRAGMKSEGEIDITTAKGMDPNIVKEFDSYGVR
>Mature_541_residues
MKIRIALLVLLTLLTAPATRSNAADDRGGRVALVIGNAKYPDSEKPLKQPVNDARELADELKRDGFDVDVGENLGGDAMR
RAFDRLYNRVKPGSVALVFFSGFGIQSGRQSYMIPVDAQIWTEPDVRRDGIGLETVLGELNSRGATVKIALIDASRRNPF
ERRFRSFSAGLAPIIAPGGSLVMYSAALSSVVSDNGGDRSLFVSELLKEIRVPGLGAEEALNRTRVGVTRASRSEQVPWI
SSSLAEDFAFVPAAATAASDSAPKPAATAAPATSPIVDRTPPEAPAAPKPVEAKPAEIKPAETKPAPTPPVAAAEPKPAP
LPAAAPDKPAELAKQIELPKPIDVPKELPKELSKELGTKVEPADPKQNDDKIRLALRDDPTVQSLNKRIDDNPADANALY
RRGQVYASKGAYWSAIKDFDEALRLNPRDVEAYNNRCWVRTVVDELTAALKDCNEALRLRPNFVDALDSRGLLNLKNGQN
KNAIADFDAALKINPRLTSSLYGRGLARQRAGMKSEGEIDITTAKGMDPNIVKEFDSYGVR

Specific function: Unknown

COG id: COG4249

COG function: function code R; Uncharacterized protein containing caspase domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58347; Mature: 58347

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRIALLVLLTLLTAPATRSNAADDRGGRVALVIGNAKYPDSEKPLKQPVNDARELADE
CEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
LKRDGFDVDVGENLGGDAMRRAFDRLYNRVKPGSVALVFFSGFGIQSGRQSYMIPVDAQI
HHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEECCEE
WTEPDVRRDGIGLETVLGELNSRGATVKIALIDASRRNPFERRFRSFSAGLAPIIAPGGS
CCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCC
LVMYSAALSSVVSDNGGDRSLFVSELLKEIRVPGLGAEEALNRTRVGVTRASRSEQVPWI
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEECCCCCCCCCH
SSSLAEDFAFVPAAATAASDSAPKPAATAAPATSPIVDRTPPEAPAAPKPVEAKPAEIKP
HHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AETKPAPTPPVAAAEPKPAPLPAAAPDKPAELAKQIELPKPIDVPKELPKELSKELGTKV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
EPADPKQNDDKIRLALRDDPTVQSLNKRIDDNPADANALYRRGQVYASKGAYWSAIKDFD
CCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHCCCEEECCCCHHHHHHHHH
EALRLNPRDVEAYNNRCWVRTVVDELTAALKDCNEALRLRPNFVDALDSRGLLNLKNGQN
HHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEECCCCC
KNAIADFDAALKINPRLTSSLYGRGLARQRAGMKSEGEIDITTAKGMDPNIVKEFDSYGV
CCCEECCCCEEEECCHHHHHHHHCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCC
R
C
>Mature Secondary Structure
MKIRIALLVLLTLLTAPATRSNAADDRGGRVALVIGNAKYPDSEKPLKQPVNDARELADE
CEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
LKRDGFDVDVGENLGGDAMRRAFDRLYNRVKPGSVALVFFSGFGIQSGRQSYMIPVDAQI
HHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEECCEE
WTEPDVRRDGIGLETVLGELNSRGATVKIALIDASRRNPFERRFRSFSAGLAPIIAPGGS
CCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCC
LVMYSAALSSVVSDNGGDRSLFVSELLKEIRVPGLGAEEALNRTRVGVTRASRSEQVPWI
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEECCCCCCCCCH
SSSLAEDFAFVPAAATAASDSAPKPAATAAPATSPIVDRTPPEAPAAPKPVEAKPAEIKP
HHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AETKPAPTPPVAAAEPKPAPLPAAAPDKPAELAKQIELPKPIDVPKELPKELSKELGTKV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
EPADPKQNDDKIRLALRDDPTVQSLNKRIDDNPADANALYRRGQVYASKGAYWSAIKDFD
CCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHCCCEEECCCCHHHHHHHHH
EALRLNPRDVEAYNNRCWVRTVVDELTAALKDCNEALRLRPNFVDALDSRGLLNLKNGQN
HHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEECCCCC
KNAIADFDAALKINPRLTSSLYGRGLARQRAGMKSEGEIDITTAKGMDPNIVKEFDSYGV
CCCEECCCCEEEECCHHHHHHHHCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA