| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86747992
Identifier: 86747992
GI number: 86747992
Start: 995378
End: 996349
Strand: Reverse
Name: 86747992
Synonym: RPB_0866
Alternate gene names: NA
Gene position: 996349-995378 (Counterclockwise)
Preceding gene: 86747993
Following gene: 86747991
Centisome position: 18.69
GC content: 65.95
Gene sequence:
>972_bases ATGCCCATGCCTGCATTGTTCAAAGGCCGTCTGTCGATCCCGGTGATCGGCTCGCCGCTGTTCATCATTTCGACGCCCGA TCTGGTGATCGCGCAATGCAAGGCCGGTGTGGTCGGCTCGTTTCCCGCGCTGAATGCGCGGCCGGCGGCGCTGCTGGACG AATGGCTGCATCGCATCAAGGAAGAGCTCGCCGCCCACGACAAGGCGCATCCGGATCGCCTGTCGGCCCCCTTCGCGGTC AACCAGATCGTGCACAAATCCAACAACCGGCTCGATGCCGATCTGGCGCTGTGCGAGAAGCACAAGGTGCCGATGCTGAT CACCTCGCTCGGCGCCCGCGAGGAGCTGAACCAGGCCGCGCATAATTGGGGCGGCATCGTGTTCCACGACGTCATCAACC AGCGCTTCGCCCACAAGGCGGTCGAGAAGGGCGCCGACGGCCTGATCCTGGTCGCGGCCGGCGCCGGCGGCCATGCCGGC ATGCAGTCGCCGTTCGCCTTCGTCACCGAGACGCGCAGCTGGTACGACGGCCCGATCGCGCTGTCGGGCGCCATCGGCAA CGGCCGCGCGATCCGCGCCGCCCGCGTGCTCGGCGCCGACTTCGCCTATATCGGCTCGGCCTTCATCGCCACCCAGGAAG CCAATGCCGTGCCGCGCTACAAGGAGATGATCACCACCTCCGGCGCCGACGACATCGTCTATTCCAATTTGTTCACCGGC GTGCACGGCAACTATCTGAAGCCGTCGATCGTCGCCGCCGGCATGGACCCGGACAATCTCGAACAGTCCGATCCGTCGAA GATGAATTTCGGCACCGACGAAGCCGGCGAGCGCGCCAAGCCGAAGGCCTGGAAGGAAATCTGGGGCGCGGGCCAGGGCA TCGGCAGCATCACCGGCATCGTGCCGGTCGCCGAAATGGTCGCGCGCTTCAAGCAGGAATACGACGACGCGATCGACCCG CCGCTGGCGTAG
Upstream 100 bases:
>100_bases GCTGCATTTTTCCGCATCGACCGCCTTGCAGGCCGGTTCCTGCCTTGCTTTTGTGTCGCCGCGGTTGCACCGCCAAACAC AACAAGAGGAGACATCCGGA
Downstream 100 bases:
>100_bases TGGCGCGCCAAGCACAGACGTCATCCTGAGGAGCGCGCCGTCTTCGGCGCGCCTCGAAGGATGACAGCAACAAAGGCGGC TGCGGCCCATCCTTCGAGGC
Product: 2-nitropropane dioxygenase, NPD
Products: NA
Alternate protein names: 2-Nitropropane Dioxygenase; 2-Nitropropane Dioxygenase Family Protein; Oxidoreductase 2-Nitropropane Dioxygenase Family; Dioxygenase; Oxidoreductase; 2-Nitropropane Dioxygenase Family; 2-Nitropropane Dioxygenase Npd; Dioxygenases Related 2-Nitropropane Dioxygenase; 2-Nitropropane Dioxygenase Family Oxidoreductase; 2-Nitropropane Dioxygenase-Like Dioxygenase; Dioxygenase Protein; Transmembrane Protein; Enoyl-(Acyl-Carrier-Protein) Reductase II; 2-Nitropropane Dioxygenase Protein; Dioxygenase Oxidoreductase -Nitropropane Dioxygenase Npd
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MPMPALFKGRLSIPVIGSPLFIISTPDLVIAQCKAGVVGSFPALNARPAALLDEWLHRIKEELAAHDKAHPDRLSAPFAV NQIVHKSNNRLDADLALCEKHKVPMLITSLGAREELNQAAHNWGGIVFHDVINQRFAHKAVEKGADGLILVAAGAGGHAG MQSPFAFVTETRSWYDGPIALSGAIGNGRAIRAARVLGADFAYIGSAFIATQEANAVPRYKEMITTSGADDIVYSNLFTG VHGNYLKPSIVAAGMDPDNLEQSDPSKMNFGTDEAGERAKPKAWKEIWGAGQGIGSITGIVPVAEMVARFKQEYDDAIDP PLA
Sequences:
>Translated_323_residues MPMPALFKGRLSIPVIGSPLFIISTPDLVIAQCKAGVVGSFPALNARPAALLDEWLHRIKEELAAHDKAHPDRLSAPFAV NQIVHKSNNRLDADLALCEKHKVPMLITSLGAREELNQAAHNWGGIVFHDVINQRFAHKAVEKGADGLILVAAGAGGHAG MQSPFAFVTETRSWYDGPIALSGAIGNGRAIRAARVLGADFAYIGSAFIATQEANAVPRYKEMITTSGADDIVYSNLFTG VHGNYLKPSIVAAGMDPDNLEQSDPSKMNFGTDEAGERAKPKAWKEIWGAGQGIGSITGIVPVAEMVARFKQEYDDAIDP PLA >Mature_322_residues PMPALFKGRLSIPVIGSPLFIISTPDLVIAQCKAGVVGSFPALNARPAALLDEWLHRIKEELAAHDKAHPDRLSAPFAVN QIVHKSNNRLDADLALCEKHKVPMLITSLGAREELNQAAHNWGGIVFHDVINQRFAHKAVEKGADGLILVAAGAGGHAGM QSPFAFVTETRSWYDGPIALSGAIGNGRAIRAARVLGADFAYIGSAFIATQEANAVPRYKEMITTSGADDIVYSNLFTGV HGNYLKPSIVAAGMDPDNLEQSDPSKMNFGTDEAGERAKPKAWKEIWGAGQGIGSITGIVPVAEMVARFKQEYDDAIDPP LA
Specific function: Unknown
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34496; Mature: 34365
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMPALFKGRLSIPVIGSPLFIISTPDLVIAQCKAGVVGSFPALNARPAALLDEWLHRIK CCCCCCCCCCCCCEEECCCEEEEECCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH EELAAHDKAHPDRLSAPFAVNQIVHKSNNRLDADLALCEKHKVPMLITSLGAREELNQAA HHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHCCCHHHHHHHH HNWGGIVFHDVINQRFAHKAVEKGADGLILVAAGAGGHAGMQSPFAFVTETRSWYDGPIA HHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHEECCCCCCCCCEE LSGAIGNGRAIRAARVLGADFAYIGSAFIATQEANAVPRYKEMITTSGADDIVYSNLFTG EEECCCCCCHHHHHHHHHCHHHHHHHHHHEECCCCCCHHHHHHHHCCCCCHHHHHHHHHC VHGNYLKPSIVAAGMDPDNLEQSDPSKMNFGTDEAGERAKPKAWKEIWGAGQGIGSITGI CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHH VPVAEMVARFKQEYDDAIDPPLA HHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PMPALFKGRLSIPVIGSPLFIISTPDLVIAQCKAGVVGSFPALNARPAALLDEWLHRIK CCCCCCCCCCCCEEECCCEEEEECCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH EELAAHDKAHPDRLSAPFAVNQIVHKSNNRLDADLALCEKHKVPMLITSLGAREELNQAA HHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHCCCHHHHHHHH HNWGGIVFHDVINQRFAHKAVEKGADGLILVAAGAGGHAGMQSPFAFVTETRSWYDGPIA HHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHEECCCCCCCCCEE LSGAIGNGRAIRAARVLGADFAYIGSAFIATQEANAVPRYKEMITTSGADDIVYSNLFTG EEECCCCCCHHHHHHHHHCHHHHHHHHHHEECCCCCCHHHHHHHHCCCCCHHHHHHHHHC VHGNYLKPSIVAAGMDPDNLEQSDPSKMNFGTDEAGERAKPKAWKEIWGAGQGIGSITGI CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHH VPVAEMVARFKQEYDDAIDPPLA HHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA