Click here to switch to the map view.

The map label for this gene is bdlA [H]

Identifier: 86747734

GI number: 86747734

Start: 683880

End: 685568

Strand: Direct

Name: bdlA [H]

Synonym: RPB_0608

Alternate gene names: 86747734

Gene position: 683880-685568 (Clockwise)

Preceding gene: 86747733

Following gene: 86747736

Centisome position: 12.83

GC content: 64.54

Gene sequence:

>1689_bases
ATGTTCTCGTTGTTCAAGCGCGCCGGCAATGCTCCGTCTCCCGCAGCGATTCTGGATGCGCTCAATCGCTCCCAGGCGAT
CATCGAATTCAATCTCGACGGCGTCGTGCTGAACGCGAACGAGAATTTCCTGGCGGCGCTCGGCTACTCGCTCGACGAGA
TCAAGGGCAAGCACCACAGCATCTTCATCGATTCGCAGGAGGCCAAGAGCGACGCGTATCGCCAGTTCTGGGCCGGTCTG
AAATCCGGCCGATACCAGAGCGGAGAGTTCAAGCGGATCGCCAAGGGCGGCCGCGACATCTGGATCCAGGCCTCGTACAA
TCCGGTGTTGAACACCGACGGCGAGCCGATCTGCGTGGTGAAATACGCCACCGACATCACGCCGGCGAAGCGGCGGGCGA
TGGAGGATGCCGGCAAGATCGCGGCGATCGGGCGCGCCCAGGCGGTGATCGAATTCGCGCTCGACGGCACCATCCTCGAT
GCCAATCCCGGGTTTCTCGGCGCGATGGGCTACACGCTCGACGAAATCAAGGGCAAGCATCATTCGATGTTCGTCACGCC
GCAGGAGCGCGCCAGCGCCGCCTATCGCGAGTTCTGGGCGCAGCTCAATCGCGGCGAATATCTCGCCTCCGAATACAAGC
GGATCGGCAAGGGCGGTCGCGAAGTCTGGATTCTCGCGTCCTACAATCCGATCCTCGACGACACCGGCCGGCCGTTCAAG
GTCGTCAAATTCGCCACCGACGTCACCGCGCAGAAGCTCGAGACCGCCGACCTCGCCGGCCAGATCGATGCGATCGGCAA
GTCGCAGGCGGTGATCGAGTTCGGCATCGACGGCACCGTCCTGGTCGCCAACGACAATTTCCTCCACGCGCTGGGCTACA
CGCTGGCCGAGATCAAGGGCAAGCATCATTCGATGTTCGTCGAGCCGGCCGAGCGCGACAGCGAGGCCTATCGCAGGTTC
TGGGCGGAACTCGCCGCCGGCAAGTATCAGGCCGCGGAGTACAAGCGGATCGGCAAGGGCGGCAAGGAAGTCTGGATTCA
GGCGTCGTACAATCCGATCCTCGATCTCAACGGCAAGCCGTTCAAGGTGGTGAAATACGCCACCGACACCACCCGGCAGG
TGCTGATCCGGCTCGGCAACGAGCGGGTGCGCGGGATGATGGAATCGGTCGCCGCCGGCGCCGAGGAACTGAACGCGTCG
GTGCGCGAGATTTCCGAGGCGATGACAAAGTCGCGCGAGACGGCGCTGTCCGCGGTCGGCGAGGTCGACGCCGCCGACGG
CCAGGCCAACCGGCTCAACGAGGCCGCGCAGGCGATGACCGGGATCGTCGAACTGATCGGCCACATCACCGGGCAGATCA
ATCTCTTGGCGCTGAACGCGACCATCGAATCGGCGCGCGCTGGCGAGGCCGGGCGCGGCTTCGCGGTGGTCGCCTCGGAG
GTCAAGAACCTCGCCAATCAGGCCAAGCAGGCCACCGACAAGATCGGCGCCGAGATCGAGAATCTGAACGGCATTTCCGG
CGACGTGGTCGGCGCGCTGGGCAAGATCAAGACCGCGATCCAGAACGTCAGCGAATACGTCACCTCGACCGCCGCCGCGG
TCGAAGAACAGAGCACGGTGACCGGCGAAATGTCGTCGAGCATGCAGCGCGCCGCCGCCGAAGCCGCCGCGATGGCGGCG
GGCGGCTGA

Upstream 100 bases:

>100_bases
AGTCATCGTTGTGATAGTCGCGCTGCAGGTAGTCATCACCATTGCTTGCCACCGCTCGACGGTCCATCTGGCCGCCAGGT
TCTCACAGAGGCTCTCCGCA

Downstream 100 bases:

>100_bases
GCCGAGGGATCGCTGCCGCTCGCCGTATCGCGATCAGGCTGCCGGCTGCGCCATGCTGCTGCGGCCGCCCACTCCCTCCC
GCACCACCTCGCCCAGCGCT

Product: methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor

Products: NA

Alternate protein names: Chemotaxis regulator BdlA [H]

Number of amino acids: Translated: 562; Mature: 562

Protein sequence:

>562_residues
MFSLFKRAGNAPSPAAILDALNRSQAIIEFNLDGVVLNANENFLAALGYSLDEIKGKHHSIFIDSQEAKSDAYRQFWAGL
KSGRYQSGEFKRIAKGGRDIWIQASYNPVLNTDGEPICVVKYATDITPAKRRAMEDAGKIAAIGRAQAVIEFALDGTILD
ANPGFLGAMGYTLDEIKGKHHSMFVTPQERASAAYREFWAQLNRGEYLASEYKRIGKGGREVWILASYNPILDDTGRPFK
VVKFATDVTAQKLETADLAGQIDAIGKSQAVIEFGIDGTVLVANDNFLHALGYTLAEIKGKHHSMFVEPAERDSEAYRRF
WAELAAGKYQAAEYKRIGKGGKEVWIQASYNPILDLNGKPFKVVKYATDTTRQVLIRLGNERVRGMMESVAAGAEELNAS
VREISEAMTKSRETALSAVGEVDAADGQANRLNEAAQAMTGIVELIGHITGQINLLALNATIESARAGEAGRGFAVVASE
VKNLANQAKQATDKIGAEIENLNGISGDVVGALGKIKTAIQNVSEYVTSTAAAVEEQSTVTGEMSSSMQRAAAEAAAMAA
GG

Sequences:

>Translated_562_residues
MFSLFKRAGNAPSPAAILDALNRSQAIIEFNLDGVVLNANENFLAALGYSLDEIKGKHHSIFIDSQEAKSDAYRQFWAGL
KSGRYQSGEFKRIAKGGRDIWIQASYNPVLNTDGEPICVVKYATDITPAKRRAMEDAGKIAAIGRAQAVIEFALDGTILD
ANPGFLGAMGYTLDEIKGKHHSMFVTPQERASAAYREFWAQLNRGEYLASEYKRIGKGGREVWILASYNPILDDTGRPFK
VVKFATDVTAQKLETADLAGQIDAIGKSQAVIEFGIDGTVLVANDNFLHALGYTLAEIKGKHHSMFVEPAERDSEAYRRF
WAELAAGKYQAAEYKRIGKGGKEVWIQASYNPILDLNGKPFKVVKYATDTTRQVLIRLGNERVRGMMESVAAGAEELNAS
VREISEAMTKSRETALSAVGEVDAADGQANRLNEAAQAMTGIVELIGHITGQINLLALNATIESARAGEAGRGFAVVASE
VKNLANQAKQATDKIGAEIENLNGISGDVVGALGKIKTAIQNVSEYVTSTAAAVEEQSTVTGEMSSSMQRAAAEAAAMAA
GG
>Mature_562_residues
MFSLFKRAGNAPSPAAILDALNRSQAIIEFNLDGVVLNANENFLAALGYSLDEIKGKHHSIFIDSQEAKSDAYRQFWAGL
KSGRYQSGEFKRIAKGGRDIWIQASYNPVLNTDGEPICVVKYATDITPAKRRAMEDAGKIAAIGRAQAVIEFALDGTILD
ANPGFLGAMGYTLDEIKGKHHSMFVTPQERASAAYREFWAQLNRGEYLASEYKRIGKGGREVWILASYNPILDDTGRPFK
VVKFATDVTAQKLETADLAGQIDAIGKSQAVIEFGIDGTVLVANDNFLHALGYTLAEIKGKHHSMFVEPAERDSEAYRRF
WAELAAGKYQAAEYKRIGKGGKEVWIQASYNPILDLNGKPFKVVKYATDTTRQVLIRLGNERVRGMMESVAAGAEELNAS
VREISEAMTKSRETALSAVGEVDAADGQANRLNEAAQAMTGIVELIGHITGQINLLALNATIESARAGEAGRGFAVVASE
VKNLANQAKQATDKIGAEIENLNGISGDVVGALGKIKTAIQNVSEYVTSTAAAVEEQSTVTGEMSSSMQRAAAEAAAMAA
GG

Specific function: Essential for biofilm dispersion by sensing environmental cues. May be involved in sensing and transducing signals within cells, resulting in the modulation of c-di-GMP levels, swimming motility and adhesiveness of the bacterial cell surface [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=168, Percent_Identity=35.1190476190476, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1788195, Length=166, Percent_Identity=36.144578313253, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1787690, Length=168, Percent_Identity=35.1190476190476, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788194, Length=161, Percent_Identity=34.1614906832298, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00015 MCPsignal; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 60427; Mature: 60427

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSLFKRAGNAPSPAAILDALNRSQAIIEFNLDGVVLNANENFLAALGYSLDEIKGKHHS
CCCHHHHCCCCCCHHHHHHHHCCCCEEEEEECCEEEEECCCCEEHHHCCCHHHHCCCCEE
IFIDSQEAKSDAYRQFWAGLKSGRYQSGEFKRIAKGGRDIWIQASYNPVLNTDGEPICVV
EEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCEEEEE
KYATDITPAKRRAMEDAGKIAAIGRAQAVIEFALDGTILDANPGFLGAMGYTLDEIKGKH
EEECCCCHHHHHHHHHCCCEEEHHHHHHHHHHEECCEEEECCCCCEECCCCCHHHHCCCC
HSMFVTPQERASAAYREFWAQLNRGEYLASEYKRIGKGGREVWILASYNPILDDTGRPFK
CEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEE
VVKFATDVTAQKLETADLAGQIDAIGKSQAVIEFGIDGTVLVANDNFLHALGYTLAEIKG
EEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHCC
KHHSMFVEPAERDSEAYRRFWAELAAGKYQAAEYKRIGKGGKEVWIQASYNPILDLNGKP
CCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCEEECCCCC
FKVVKYATDTTRQVLIRLGNERVRGMMESVAAGAEELNASVREISEAMTKSRETALSAVG
EEEEEECCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
EVDAADGQANRLNEAAQAMTGIVELIGHITGQINLLALNATIESARAGEAGRGFAVVASE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCCCCCCHHHHHHH
VKNLANQAKQATDKIGAEIENLNGISGDVVGALGKIKTAIQNVSEYVTSTAAAVEEQSTV
HHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGEMSSSMQRAAAEAAAMAAGG
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFSLFKRAGNAPSPAAILDALNRSQAIIEFNLDGVVLNANENFLAALGYSLDEIKGKHHS
CCCHHHHCCCCCCHHHHHHHHCCCCEEEEEECCEEEEECCCCEEHHHCCCHHHHCCCCEE
IFIDSQEAKSDAYRQFWAGLKSGRYQSGEFKRIAKGGRDIWIQASYNPVLNTDGEPICVV
EEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCEEEEE
KYATDITPAKRRAMEDAGKIAAIGRAQAVIEFALDGTILDANPGFLGAMGYTLDEIKGKH
EEECCCCHHHHHHHHHCCCEEEHHHHHHHHHHEECCEEEECCCCCEECCCCCHHHHCCCC
HSMFVTPQERASAAYREFWAQLNRGEYLASEYKRIGKGGREVWILASYNPILDDTGRPFK
CEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEE
VVKFATDVTAQKLETADLAGQIDAIGKSQAVIEFGIDGTVLVANDNFLHALGYTLAEIKG
EEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHCC
KHHSMFVEPAERDSEAYRRFWAELAAGKYQAAEYKRIGKGGKEVWIQASYNPILDLNGKP
CCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCEEECCCCC
FKVVKYATDTTRQVLIRLGNERVRGMMESVAAGAEELNASVREISEAMTKSRETALSAVG
EEEEEECCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
EVDAADGQANRLNEAAQAMTGIVELIGHITGQINLLALNATIESARAGEAGRGFAVVASE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCCCCCCHHHHHHH
VKNLANQAKQATDKIGAEIENLNGISGDVVGALGKIKTAIQNVSEYVTSTAAAVEEQSTV
HHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGEMSSSMQRAAAEAAAMAAGG
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]