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The map label for this gene is chrR [H]

Identifier: 86747613

GI number: 86747613

Start: 545176

End: 545835

Strand: Direct

Name: chrR [H]

Synonym: RPB_0487

Alternate gene names: 86747613

Gene position: 545176-545835 (Clockwise)

Preceding gene: 86747612

Following gene: 86747615

Centisome position: 10.23

GC content: 73.48

Gene sequence:

>660_bases
ATGACGGTGCGGCATCACATCGGCGACGATCTGCTGCTGAGCTACGCGGCCGGCACGCTGGACGAAGCCTCGAGCCTGCT
GGTCGCCACCCATCTCGCGCTGTGCCCGGCCTGCCGCGCCCGTGCGGCGGCGGCGGACGACCTCGGCGGCGCGCTGCTCG
ACGCCTTGCCGGCGGCGGAGTTGTCGCCCGGGCTGCACGACGCCGTGCTGGCGCGGCTCCGCGCCGAACCCCTGGCGGCG
CCGGCGCCGGCGACGCCGCTGCGGCCGCGCTCCGAGATCGTGATTCCGGAGCCGCTGCGCAGCTATCTCGGCGGTGATTT
CGAGACACTGCGCTGGACCAAGCTCGCGCCTCGGGTACACCAGATCGCGATCGACCTTCCGAACTGCCGGCCGCGCGCGC
GGCTGCTGCGGTTTCAGGCCGGCACCCGGGTGCCGGCGCACAGTCATGCCGGCCGCGAACTGACGCTGGTGCTGAGCGGC
AGCCTGTGTGACCGCGACGCGGTGCTGGCGCGCGGCGACGTCGCCGAGACCGACGAGCACACCGAGCATCAGCCCCACGC
CGGGCCCGGCGACGACTGCATCTGCCTCGCCGTCACCGACGCGCCGCTGAGGTTCAAGGGCGTTTTGGCCCGGCTGCTGC
AGCCCTGGTTCGGGATCTAG

Upstream 100 bases:

>100_bases
CCCAACGGCTCGGCCTGCCGGTCGGGACGGTGAAGTCGCGGATCCGGCTGGCGTTCGGCAAGCTGCGCGCCGCGCTCGAG
CCGCTGACGGGAGCCGGACG

Downstream 100 bases:

>100_bases
GCTTGGGTTCTGACTGAATCCAATTCTGCTCGAATCAGAGCCGGACCGCGGCGCTAGAGCAGCTCTGGTTTTGATGGAAT
CACCGACGTCATCCTGAGGT

Product: anti-sigm factor, ChrR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTVRHHIGDDLLLSYAAGTLDEASSLLVATHLALCPACRARAAAADDLGGALLDALPAAELSPGLHDAVLARLRAEPLAA
PAPATPLRPRSEIVIPEPLRSYLGGDFETLRWTKLAPRVHQIAIDLPNCRPRARLLRFQAGTRVPAHSHAGRELTLVLSG
SLCDRDAVLARGDVAETDEHTEHQPHAGPGDDCICLAVTDAPLRFKGVLARLLQPWFGI

Sequences:

>Translated_219_residues
MTVRHHIGDDLLLSYAAGTLDEASSLLVATHLALCPACRARAAAADDLGGALLDALPAAELSPGLHDAVLARLRAEPLAA
PAPATPLRPRSEIVIPEPLRSYLGGDFETLRWTKLAPRVHQIAIDLPNCRPRARLLRFQAGTRVPAHSHAGRELTLVLSG
SLCDRDAVLARGDVAETDEHTEHQPHAGPGDDCICLAVTDAPLRFKGVLARLLQPWFGI
>Mature_218_residues
TVRHHIGDDLLLSYAAGTLDEASSLLVATHLALCPACRARAAAADDLGGALLDALPAAELSPGLHDAVLARLRAEPLAAP
APATPLRPRSEIVIPEPLRSYLGGDFETLRWTKLAPRVHQIAIDLPNCRPRARLLRFQAGTRVPAHSHAGRELTLVLSGS
LCDRDAVLARGDVAETDEHTEHQPHAGPGDDCICLAVTDAPLRFKGVLARLLQPWFGI

Specific function: Anti-sigma factor that inhibits the activity of the extracytoplasmic function (ECF) sigma (E) factor, thereby indirectly regulating the transcription of the cycA and rpoE genes [H]

COG id: COG3806

COG function: function code T; Anti-sigma factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012807
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23397; Mature: 23266

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRHHIGDDLLLSYAAGTLDEASSLLVATHLALCPACRARAAAADDLGGALLDALPAAE
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LSPGLHDAVLARLRAEPLAAPAPATPLRPRSEIVIPEPLRSYLGGDFETLRWTKLAPRVH
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCHHHHHHHCCCHHHHHHHHHCCCEE
QIAIDLPNCRPRARLLRFQAGTRVPAHSHAGRELTLVLSGSLCDRDAVLARGDVAETDEH
EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHEECCCCCCCCCC
TEHQPHAGPGDDCICLAVTDAPLRFKGVLARLLQPWFGI
CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVRHHIGDDLLLSYAAGTLDEASSLLVATHLALCPACRARAAAADDLGGALLDALPAAE
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LSPGLHDAVLARLRAEPLAAPAPATPLRPRSEIVIPEPLRSYLGGDFETLRWTKLAPRVH
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCHHHHHHHCCCHHHHHHHHHCCCEE
QIAIDLPNCRPRARLLRFQAGTRVPAHSHAGRELTLVLSGSLCDRDAVLARGDVAETDEH
EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHEECCCCCCCCCC
TEHQPHAGPGDDCICLAVTDAPLRFKGVLARLLQPWFGI
CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721683 [H]