Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86609135
Identifier: 86609135
GI number: 86609135
Start: 1751647
End: 1752858
Strand: Reverse
Name: 86609135
Synonym: CYB_1675
Alternate gene names: NA
Gene position: 1752858-1751647 (Counterclockwise)
Preceding gene: 86609136
Following gene: 86609134
Centisome position: 57.53
GC content: 60.97
Gene sequence:
>1212_bases ATGTCCAAAACCAAGCTGAGCGCCTGGGTCATGGGCTGGGGGTTAGCCTGCACTGCTGCTCTCTTTTTGCCCAGCGTGGC TGCTCAAGCTCAGGTGACCCTCGGTGTGCAGCCGGTGCGGGTGGTGCAAGGGATCCCTTTGTACCAGAAGGAGGTTTGGG TTGGAGACAATCGGATCCCAGTTTCCATCGTGGTGGTTTCTCTCGCAGCCGGCCAACTGCGGCCCATCTGGGCTGCACGC GCGGGGCTGGTGGGTTTGGGGGAGCTGTCTTCCTTTGGCCCTGAACAGGGGGCAGTGGCCGCCATTAACGGTGGGTTTTT CAACCGCAACACCCGTCAGCCGCTGGGGGCGATTCGTCGGGATGGCCGCTGGATCTCCAGCCCCATTTTGGGTCGTGGGG TCATCGCCTGGTCGGATGGGACGGCAGGGCAAGAAGGGGGATCCGTGCGCTTTGCCCGTTTGCGGATGCAAGCAGAGCTG CGCAATGACATTGGGGATCAAATCCCAGTGGTGGGCATCAATACAGGCTATATCCTGCCCGGCATCTCCCAGTTCACCCC CGACTGGGGATCCACCTACACCACCCAAACGGACGACGAAATGCTCGTGATGGTGCGGCAGGATCAGGTGCAAGAAATTC TGGTGGCGGGCCTGGCCGGCAGTTTGACGGTACAGATTCCCAGCGAGGGGTATGTATTGGCAGGGCGGGGGCTAGAAGGT GCCCTAGAAGCCCGCAAGCTGGTTCCCGGGGATCGCCTCAGCTTTTATCTGCGCTTGGATCCGCCTGAGCTGGAGGTCTA TCCCCACATCCTAGGGGCAGGGCCGCTCTTGCTCTTGGATGGACAGGTGGTTTTGGATGCCCGATTGGAGGGATTTCAGC CTCTCTTTCGCAGGCAGCGAGCCGCCCGCAGTGCCATCGGCCAACTGGACAGCGGACATTTGCTGCTGGTGACCGCCGGC AATGCCCAGGAAAATCAAGGGCTCACCCTGCTGGAGATGGCACAGTTGATGCAGCAATTGGGCTGTCGCCATGCCTTGAA CTTGGATGGGGGCAATGCTTCCACCTTGGTGCTGGGGGGAGAGGCCGTCAATTTGGAACACCGACACCCAGAAGCCAGCC CACCCAACAGTGAGACGGATCCCAGTCCCTCCCGGCGGCGTACACCCCGAGTTCACAATGGCCTAGGGTTTTTCCCAAGC CCAAGTCGGTGA
Upstream 100 bases:
>100_bases TTTCCAGGGATCCTGTTGTCGCTCATTGTGATGGGAACCTTTGCCGCAGGGGGATAATCATCTCCCAATGACAATGGTGA AGCCCTAAAGACGTGAAGAC
Downstream 100 bases:
>100_bases CAGAAAACTTTTGTGCCGGCGGGATAGAGTCTTTTCCCTTTGATCCAGGGATCGAGGGTGGGATCCCCGAACTTTCTGGC TGATTGGAGGAGGGGGCAGG
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 403; Mature: 402
Protein sequence:
>403_residues MSKTKLSAWVMGWGLACTAALFLPSVAAQAQVTLGVQPVRVVQGIPLYQKEVWVGDNRIPVSIVVVSLAAGQLRPIWAAR AGLVGLGELSSFGPEQGAVAAINGGFFNRNTRQPLGAIRRDGRWISSPILGRGVIAWSDGTAGQEGGSVRFARLRMQAEL RNDIGDQIPVVGINTGYILPGISQFTPDWGSTYTTQTDDEMLVMVRQDQVQEILVAGLAGSLTVQIPSEGYVLAGRGLEG ALEARKLVPGDRLSFYLRLDPPELEVYPHILGAGPLLLLDGQVVLDARLEGFQPLFRRQRAARSAIGQLDSGHLLLVTAG NAQENQGLTLLEMAQLMQQLGCRHALNLDGGNASTLVLGGEAVNLEHRHPEASPPNSETDPSPSRRRTPRVHNGLGFFPS PSR
Sequences:
>Translated_403_residues MSKTKLSAWVMGWGLACTAALFLPSVAAQAQVTLGVQPVRVVQGIPLYQKEVWVGDNRIPVSIVVVSLAAGQLRPIWAAR AGLVGLGELSSFGPEQGAVAAINGGFFNRNTRQPLGAIRRDGRWISSPILGRGVIAWSDGTAGQEGGSVRFARLRMQAEL RNDIGDQIPVVGINTGYILPGISQFTPDWGSTYTTQTDDEMLVMVRQDQVQEILVAGLAGSLTVQIPSEGYVLAGRGLEG ALEARKLVPGDRLSFYLRLDPPELEVYPHILGAGPLLLLDGQVVLDARLEGFQPLFRRQRAARSAIGQLDSGHLLLVTAG NAQENQGLTLLEMAQLMQQLGCRHALNLDGGNASTLVLGGEAVNLEHRHPEASPPNSETDPSPSRRRTPRVHNGLGFFPS PSR >Mature_402_residues SKTKLSAWVMGWGLACTAALFLPSVAAQAQVTLGVQPVRVVQGIPLYQKEVWVGDNRIPVSIVVVSLAAGQLRPIWAARA GLVGLGELSSFGPEQGAVAAINGGFFNRNTRQPLGAIRRDGRWISSPILGRGVIAWSDGTAGQEGGSVRFARLRMQAELR NDIGDQIPVVGINTGYILPGISQFTPDWGSTYTTQTDDEMLVMVRQDQVQEILVAGLAGSLTVQIPSEGYVLAGRGLEGA LEARKLVPGDRLSFYLRLDPPELEVYPHILGAGPLLLLDGQVVLDARLEGFQPLFRRQRAARSAIGQLDSGHLLLVTAGN AQENQGLTLLEMAQLMQQLGCRHALNLDGGNASTLVLGGEAVNLEHRHPEASPPNSETDPSPSRRRTPRVHNGLGFFPSP SR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43200; Mature: 43069
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTKLSAWVMGWGLACTAALFLPSVAAQAQVTLGVQPVRVVQGIPLYQKEVWVGDNRIP CCCCCEEHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHCCCCCEEEEEEECCCCCC VSIVVVSLAAGQLRPIWAARAGLVGLGELSSFGPEQGAVAAINGGFFNRNTRQPLGAIRR CEEEEEEHHCCCCCCHHHHHCCCEECCHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHH DGRWISSPILGRGVIAWSDGTAGQEGGSVRFARLRMQAELRNDIGDQIPVVGINTGYILP CCEEECCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCEEEECCCCCCC GISQFTPDWGSTYTTQTDDEMLVMVRQDQVQEILVAGLAGSLTVQIPSEGYVLAGRGLEG CHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCH ALEARKLVPGDRLSFYLRLDPPELEVYPHILGAGPLLLLDGQVVLDARLEGFQPLFRRQR HHHHHHCCCCCCEEEEEEECCCCEEEECCEECCCCEEEECCCEEEECHHHHHHHHHHHHH AARSAIGQLDSGHLLLVTAGNAQENQGLTLLEMAQLMQQLGCRHALNLDGGNASTLVLGG HHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEEECC EAVNLEHRHPEASPPNSETDPSPSRRRTPRVHNGLGFFPSPSR EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC >Mature Secondary Structure SKTKLSAWVMGWGLACTAALFLPSVAAQAQVTLGVQPVRVVQGIPLYQKEVWVGDNRIP CCCCEEHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHCCCCCEEEEEEECCCCCC VSIVVVSLAAGQLRPIWAARAGLVGLGELSSFGPEQGAVAAINGGFFNRNTRQPLGAIRR CEEEEEEHHCCCCCCHHHHHCCCEECCHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHH DGRWISSPILGRGVIAWSDGTAGQEGGSVRFARLRMQAELRNDIGDQIPVVGINTGYILP CCEEECCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCEEEECCCCCCC GISQFTPDWGSTYTTQTDDEMLVMVRQDQVQEILVAGLAGSLTVQIPSEGYVLAGRGLEG CHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCH ALEARKLVPGDRLSFYLRLDPPELEVYPHILGAGPLLLLDGQVVLDARLEGFQPLFRRQR HHHHHHCCCCCCEEEEEEECCCCEEEECCEECCCCEEEECCCEEEECHHHHHHHHHHHHH AARSAIGQLDSGHLLLVTAGNAQENQGLTLLEMAQLMQQLGCRHALNLDGGNASTLVLGG HHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEEECC EAVNLEHRHPEASPPNSETDPSPSRRRTPRVHNGLGFFPSPSR EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA