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The map label for this gene is rlpA [C]

Identifier: 86609115

GI number: 86609115

Start: 1734385

End: 1735551

Strand: Reverse

Name: rlpA [C]

Synonym: CYB_1655

Alternate gene names: 86609115

Gene position: 1735551-1734385 (Counterclockwise)

Preceding gene: 86609121

Following gene: 86609111

Centisome position: 56.97

GC content: 61.18

Gene sequence:

>1167_bases
ATGCGAAATTGGAAACAGCTTGGACAGGGACTGGATCCCGCCCGCAAAATGGGCTTGGTCAGCTGTCTCTGTGTCACGGC
TTTGGGCTTGCCGGCAGGCATGTTGGGCGGCTTGACTTCGCGAGCACAAGCCTCGACGCGAACCGGATCCCCCAACACCC
GAGCAGCAGAGCTGTCACCTGCATCCAAATTGCCCCCCCCGGCCACCCCTTCCCAACCCCTCCCTGCTGCCGCAGCCCCA
GTCAGAACGCTGCCGAGAATTCCCCAAACCCCTATCTCCGGCCACGAGGGTCTTGCCCCTGCCAAACTGGGTACCCTGAA
CTTGGATCCTTCTTTGAACCGAACTCGCCAGGCAATCCCGCACCGCCTGGAAGAGGATCCCATTCTCAAGATCGGCGAGC
AACGGCAGCAAACCAGCCAGCCCATCTCCACCCTCTACGACTATCAGATGGACGGGCAACAGGTGGTTACTGTCTATGTG
CGGGATCTGCCCATTGTCAGTTTTGTCGAGCACCCTGGGCTAGAACCACCGCTGATGCGGGCCAGCACCCTTGTGGCCCA
GCTCAACCAAATGGCCCAGGGATCCCTGAAAGACACCACCATCACCTTAGGTTGGGCAGATCTGGAATTGGCCGAACAAG
GCCTGGGTGTTCCTCTCTATACCATTCGGGCCAACAGCGAGGAATTGCTGCGCATCGACGCTGGAGTGCTGTTGATCGAT
AACCAGCGCCCGGTGGATGTGGCTGTTTTGGCTGCCAATCGTCTGCGCCGTCTGCTGCTCGATGCCCCGCCCATTTCAGC
TCCGGCCCTGCCTCAACCGGCTGCTCTGACCGCCAAAGCCGCTGTTGCAGGTTCCAAGCCGAAAACAGCCCCTCAACAGG
AACCCGCCCCTGTCCGCGTGGTTGGGCCTGTGCAAGAGGGCATTGCTTCTTGGTATGACCTGCACCCAACCCGCCATGAG
ATGACGGCTGCCCACCCCACCCTGCCCTTTGGCACCGAGGTACGGGTGACCAACCTGAAAAACGGACGCCAGGCTGTCGT
GCGCATCAACGATCGCGGCCCTTTTATCCCCGGTCGGATCATCGACCTCTCCCTGCGAGCGGCAGAGGTGTTGGGGATGG
TGCGCTCAGGGCTGGCGCCTGTGCGGGTGGAAGTGGTGCAACGCTAG

Upstream 100 bases:

>100_bases
CGACCGTACAAACGGGTCAACTCAGAAACCTATGGTACATTAACTTCTGTTTTAACCGTCGCCTTGGAAGTTGTACAGGA
TTGGAGAGGAGCGCGGCCTC

Downstream 100 bases:

>100_bases
CTAGGGCACGGGTGAAAAGCGCTTGGAATCGGGGGAATAGCGCCAAGAAATGCCCTCGGGATCCCGGCTGCGGCTCCACT
CCGGAAACCCGGTTTTGAAT

Product: rare lipoprotein A family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MRNWKQLGQGLDPARKMGLVSCLCVTALGLPAGMLGGLTSRAQASTRTGSPNTRAAELSPASKLPPPATPSQPLPAAAAP
VRTLPRIPQTPISGHEGLAPAKLGTLNLDPSLNRTRQAIPHRLEEDPILKIGEQRQQTSQPISTLYDYQMDGQQVVTVYV
RDLPIVSFVEHPGLEPPLMRASTLVAQLNQMAQGSLKDTTITLGWADLELAEQGLGVPLYTIRANSEELLRIDAGVLLID
NQRPVDVAVLAANRLRRLLLDAPPISAPALPQPAALTAKAAVAGSKPKTAPQQEPAPVRVVGPVQEGIASWYDLHPTRHE
MTAAHPTLPFGTEVRVTNLKNGRQAVVRINDRGPFIPGRIIDLSLRAAEVLGMVRSGLAPVRVEVVQR

Sequences:

>Translated_388_residues
MRNWKQLGQGLDPARKMGLVSCLCVTALGLPAGMLGGLTSRAQASTRTGSPNTRAAELSPASKLPPPATPSQPLPAAAAP
VRTLPRIPQTPISGHEGLAPAKLGTLNLDPSLNRTRQAIPHRLEEDPILKIGEQRQQTSQPISTLYDYQMDGQQVVTVYV
RDLPIVSFVEHPGLEPPLMRASTLVAQLNQMAQGSLKDTTITLGWADLELAEQGLGVPLYTIRANSEELLRIDAGVLLID
NQRPVDVAVLAANRLRRLLLDAPPISAPALPQPAALTAKAAVAGSKPKTAPQQEPAPVRVVGPVQEGIASWYDLHPTRHE
MTAAHPTLPFGTEVRVTNLKNGRQAVVRINDRGPFIPGRIIDLSLRAAEVLGMVRSGLAPVRVEVVQR
>Mature_388_residues
MRNWKQLGQGLDPARKMGLVSCLCVTALGLPAGMLGGLTSRAQASTRTGSPNTRAAELSPASKLPPPATPSQPLPAAAAP
VRTLPRIPQTPISGHEGLAPAKLGTLNLDPSLNRTRQAIPHRLEEDPILKIGEQRQQTSQPISTLYDYQMDGQQVVTVYV
RDLPIVSFVEHPGLEPPLMRASTLVAQLNQMAQGSLKDTTITLGWADLELAEQGLGVPLYTIRANSEELLRIDAGVLLID
NQRPVDVAVLAANRLRRLLLDAPPISAPALPQPAALTAKAAVAGSKPKTAPQQEPAPVRVVGPVQEGIASWYDLHPTRHE
MTAAHPTLPFGTEVRVTNLKNGRQAVVRINDRGPFIPGRIIDLSLRAAEVLGMVRSGLAPVRVEVVQR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=78, Percent_Identity=47.4358974358974, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 41551; Mature: 41551

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNWKQLGQGLDPARKMGLVSCLCVTALGLPAGMLGGLTSRAQASTRTGSPNTRAAELSP
CCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHCCCCCCCCCCCEECCCC
ASKLPPPATPSQPLPAAAAPVRTLPRIPQTPISGHEGLAPAKLGTLNLDPSLNRTRQAIP
CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
HRLEEDPILKIGEQRQQTSQPISTLYDYQMDGQQVVTVYVRDLPIVSFVEHPGLEPPLMR
HHCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHCCCCCCHHHH
ASTLVAQLNQMAQGSLKDTTITLGWADLELAEQGLGVPLYTIRANSEELLRIDAGVLLID
HHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHCCCCCEEEEEECCCHHEEEEECCEEEEC
NQRPVDVAVLAANRLRRLLLDAPPISAPALPQPAALTAKAAVAGSKPKTAPQQEPAPVRV
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEE
VGPVQEGIASWYDLHPTRHEMTAAHPTLPFGTEVRVTNLKNGRQAVVRINDRGPFIPGRI
ECHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEE
IDLSLRAAEVLGMVRSGLAPVRVEVVQR
EEEHHHHHHHHHHHHHCCCCEEEEEECC
>Mature Secondary Structure
MRNWKQLGQGLDPARKMGLVSCLCVTALGLPAGMLGGLTSRAQASTRTGSPNTRAAELSP
CCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHCCCCCCCCCCCEECCCC
ASKLPPPATPSQPLPAAAAPVRTLPRIPQTPISGHEGLAPAKLGTLNLDPSLNRTRQAIP
CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
HRLEEDPILKIGEQRQQTSQPISTLYDYQMDGQQVVTVYVRDLPIVSFVEHPGLEPPLMR
HHCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHCCCCCCHHHH
ASTLVAQLNQMAQGSLKDTTITLGWADLELAEQGLGVPLYTIRANSEELLRIDAGVLLID
HHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHCCCCCEEEEEECCCHHEEEEECCEEEEC
NQRPVDVAVLAANRLRRLLLDAPPISAPALPQPAALTAKAAVAGSKPKTAPQQEPAPVRV
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEE
VGPVQEGIASWYDLHPTRHEMTAAHPTLPFGTEVRVTNLKNGRQAVVRINDRGPFIPGRI
ECHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEE
IDLSLRAAEVLGMVRSGLAPVRVEVVQR
EEEHHHHHHHHHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]