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The map label for this gene is petA [H]

Identifier: 86609083

GI number: 86609083

Start: 1693688

End: 1694671

Strand: Reverse

Name: petA [H]

Synonym: CYB_1621

Alternate gene names: 86609083

Gene position: 1694671-1693688 (Counterclockwise)

Preceding gene: 86609084

Following gene: 86609081

Centisome position: 55.62

GC content: 61.59

Gene sequence:

>984_bases
ATGAAGCGAATTGGCTTGGTCTTCTGCGCGCTGCTGCTGCTGCTGGGGATGGGGGCACGTCCGGCGGCAGCCTACCCCTA
CTATGCCCAGATGGCCTACGACAACCCCCGCGAGGCGACTGGAAAAATTGTCTGTGCCAACTGCCACCTGAACGCCATGC
CCACTCGCGCCGAGGTGCCCCAGGCCGTCACCCCCGGCCAGGTGTTCACCATCAAAGTTGGGATCCCTTATGACCTGAGC
AAGCAGCAGGTGCTGGCAGACGGCAGCAAGGGTGGGTTGAATGTGGGCGCGGTGGTGGTCTTGCCGGAGGGCTTCCGTTT
AGCCACCGAAGCCGAGATGACCGAGGAACAACGGCAAGAAACTGCCGAGACCTACATCACCCCCTACAGCGACGCGAAGC
CCAATATCCTCTTGGTCGGGCCTTTGCCGGGCGAGCAGCATCAAGAAATCGTCTTCCCGGTGGTGGCCCCTGACCCGAAA
GAGGATCCCTCGGTGGCCTTCATGAAGTATCGCGTTTACATTGGGGCCAACCGGGGTCGCGGTCAGCTCAACCCCGACGG
CAGCCTCAGCAACAACAACGTCTTCCGCGCCCCAGCCACGGGGCGTCTGGTCAACATTGCCACCCTCGACTCCGATATCA
GCGATCTGCCGGCTGAATTGGCCAGCCTGGTGCCCCCGGAATATGAGCTGCCAGGCACGCGGGTTCTCAGCTTCGAGAGC
GAAAGTGGGATCCACAACCTGGTGGTGCCACCTGGGCCGGAGCTGGTGGTTGCCGTTGGCGACAGCGTCAAAGAAGGGGA
TCCCGTCACCAACAATCCCAATGTGGGCGGCTTTGGCCAGGTGGAGCGGGATCTGGTGCTGCAAAGCCCGGATCGGGTGA
AATGGCTGGTGGCCTTCCTGGCAGCCATTACCATTACCCAGGTGCTGTTGGTGCTGAAGAAAAAGCAGGTGGAGCTCATT
CAAGCCGCCGAAATCCTCGGCTAG

Upstream 100 bases:

>100_bases
GTGCCGGCTTTTGCCGAACGATTTGGGGCAAATTGTCGAGATGGCTGTTCCAAGACTGTGTCCTAAACCTGTGATGGAAA
TTCATTCTGAGCTGAGAGTT

Downstream 100 bases:

>100_bases
CTCAAGCTCTTTCCTAGCCTGCACCTCGGAAGCATATCCGGGGTGTTTTTTGTTCGGTAGGGTTCCAAGGTAGCCTCAGC
TCTCCTCTGATCACCTGCAC

Product: apocytochrome f

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MKRIGLVFCALLLLLGMGARPAAAYPYYAQMAYDNPREATGKIVCANCHLNAMPTRAEVPQAVTPGQVFTIKVGIPYDLS
KQQVLADGSKGGLNVGAVVVLPEGFRLATEAEMTEEQRQETAETYITPYSDAKPNILLVGPLPGEQHQEIVFPVVAPDPK
EDPSVAFMKYRVYIGANRGRGQLNPDGSLSNNNVFRAPATGRLVNIATLDSDISDLPAELASLVPPEYELPGTRVLSFES
ESGIHNLVVPPGPELVVAVGDSVKEGDPVTNNPNVGGFGQVERDLVLQSPDRVKWLVAFLAAITITQVLLVLKKKQVELI
QAAEILG

Sequences:

>Translated_327_residues
MKRIGLVFCALLLLLGMGARPAAAYPYYAQMAYDNPREATGKIVCANCHLNAMPTRAEVPQAVTPGQVFTIKVGIPYDLS
KQQVLADGSKGGLNVGAVVVLPEGFRLATEAEMTEEQRQETAETYITPYSDAKPNILLVGPLPGEQHQEIVFPVVAPDPK
EDPSVAFMKYRVYIGANRGRGQLNPDGSLSNNNVFRAPATGRLVNIATLDSDISDLPAELASLVPPEYELPGTRVLSFES
ESGIHNLVVPPGPELVVAVGDSVKEGDPVTNNPNVGGFGQVERDLVLQSPDRVKWLVAFLAAITITQVLLVLKKKQVELI
QAAEILG
>Mature_327_residues
MKRIGLVFCALLLLLGMGARPAAAYPYYAQMAYDNPREATGKIVCANCHLNAMPTRAEVPQAVTPGQVFTIKVGIPYDLS
KQQVLADGSKGGLNVGAVVVLPEGFRLATEAEMTEEQRQETAETYITPYSDAKPNILLVGPLPGEQHQEIVFPVVAPDPK
EDPSVAFMKYRVYIGANRGRGQLNPDGSLSNNNVFRAPATGRLVNIATLDSDISDLPAELASLVPPEYELPGTRVLSFES
ESGIHNLVVPPGPELVVAVGDSVKEGDPVTNNPNVGGFGQVERDLVLQSPDRVKWLVAFLAAITITQVLLVLKKKQVELI
QAAEILG

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome f family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002325
- InterPro:   IPR011054 [H]

Pfam domain/function: PF01333 Apocytochr_F_C [H]

EC number: NA

Molecular weight: Translated: 35104; Mature: 35104

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS51010 CYTF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIGLVFCALLLLLGMGARPAAAYPYYAQMAYDNPREATGKIVCANCHLNAMPTRAEVP
CCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCHHCCC
QAVTPGQVFTIKVGIPYDLSKQQVLADGSKGGLNVGAVVVLPEGFRLATEAEMTEEQRQE
CCCCCCEEEEEEEECCCCCCCHHHEECCCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHH
TAETYITPYSDAKPNILLVGPLPGEQHQEIVFPVVAPDPKEDPSVAFMKYRVYIGANRGR
HHHHEECCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEEECCCCC
GQLNPDGSLSNNNVFRAPATGRLVNIATLDSDISDLPAELASLVPPEYELPGTRVLSFES
CCCCCCCCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEC
ESGIHNLVVPPGPELVVAVGDSVKEGDPVTNNPNVGGFGQVERDLVLQSPDRVKWLVAFL
CCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHEECCCHHHHHHHHHH
AAITITQVLLVLKKKQVELIQAAEILG
HHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRIGLVFCALLLLLGMGARPAAAYPYYAQMAYDNPREATGKIVCANCHLNAMPTRAEVP
CCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCHHCCC
QAVTPGQVFTIKVGIPYDLSKQQVLADGSKGGLNVGAVVVLPEGFRLATEAEMTEEQRQE
CCCCCCEEEEEEEECCCCCCCHHHEECCCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHH
TAETYITPYSDAKPNILLVGPLPGEQHQEIVFPVVAPDPKEDPSVAFMKYRVYIGANRGR
HHHHEECCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEEECCCCC
GQLNPDGSLSNNNVFRAPATGRLVNIATLDSDISDLPAELASLVPPEYELPGTRVLSFES
CCCCCCCCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEC
ESGIHNLVVPPGPELVVAVGDSVKEGDPVTNNPNVGGFGQVERDLVLQSPDRVKWLVAFL
CCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHEECCCHHHHHHHHHH
AAITITQVLLVLKKKQVELIQAAEILG
HHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA