| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is 86608581
Identifier: 86608581
GI number: 86608581
Start: 1136309
End: 1136788
Strand: Reverse
Name: 86608581
Synonym: CYB_1103
Alternate gene names: NA
Gene position: 1136788-1136309 (Counterclockwise)
Preceding gene: 86608582
Following gene: 86608580
Centisome position: 37.31
GC content: 60.62
Gene sequence:
>480_bases GTGAGTTACGAACAGCAAAAGCTGATCGCCGAGGCAGCGCAGGCTCAGTTGAGAGCAGCCAACTTCTCTGGTTCAACCGC CAAAGATGAGCCAGCACGCTTGCGTGAGCGAAACGCAGTCCTTACGGGGAGACCGGAGGAACCCGAGACCGACGCCGACA CTCCTGAGGATACGCCGACGGATCCCTTGTTGGCAGAACTCACCCCATGGGCCAGGCATCTGTTCCAAAACTTGCAGGCA GCGGGCTTGCTGGATCGGCCCCAGATCCAAGACATCCTCAGCCGCTGGCAACAGTCGGGGGGCAAGCTGACCGCGGTCAT TGGCGAGTGTACCGGCCTGAAGGCAACCACGGTCGCGGTAGCGGTGCGGTTCCCGGTAGGGTGCCGGAGGCATAGCACTT TCAAGTTCTTTGCGGATGGGGGGTATTCTGCCCGTTTGTCGGGGTGCCGCACGGTGGGAGAGCATGACTCTAGTCAATAA
Upstream 100 bases:
>100_bases AGCGGCCTATCGGCAGAGCCTGGAGACTTTACAGGAGAATCTCAAGATTGAGCAGAAAAGTGCTCCGCACCGCTAACGCG ATCGCAACCGTCTGCTGCAG
Downstream 100 bases:
>100_bases TAAGCTCAACTATACTGAAAATAATGTATAATATGTTCAGTACGGATTACTACCAGTTGATCTTTCTGTTTACTTTCGAG TCTGCCAACATGGTAGCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MSYEQQKLIAEAAQAQLRAANFSGSTAKDEPARLRERNAVLTGRPEEPETDADTPEDTPTDPLLAELTPWARHLFQNLQA AGLLDRPQIQDILSRWQQSGGKLTAVIGECTGLKATTVAVAVRFPVGCRRHSTFKFFADGGYSARLSGCRTVGEHDSSQ
Sequences:
>Translated_159_residues MSYEQQKLIAEAAQAQLRAANFSGSTAKDEPARLRERNAVLTGRPEEPETDADTPEDTPTDPLLAELTPWARHLFQNLQA AGLLDRPQIQDILSRWQQSGGKLTAVIGECTGLKATTVAVAVRFPVGCRRHSTFKFFADGGYSARLSGCRTVGEHDSSQ >Mature_158_residues SYEQQKLIAEAAQAQLRAANFSGSTAKDEPARLRERNAVLTGRPEEPETDADTPEDTPTDPLLAELTPWARHLFQNLQAA GLLDRPQIQDILSRWQQSGGKLTAVIGECTGLKATTVAVAVRFPVGCRRHSTFKFFADGGYSARLSGCRTVGEHDSSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17341; Mature: 17209
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYEQQKLIAEAAQAQLRAANFSGSTAKDEPARLRERNAVLTGRPEEPETDADTPEDTPT CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCCCCCCCCCC DPLLAELTPWARHLFQNLQAAGLLDRPQIQDILSRWQQSGGKLTAVIGECTGLKATTVAV CCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHEEE AVRFPVGCRRHSTFKFFADGGYSARLSGCRTVGEHDSSQ EEECCCCCCCCCCEEEEECCCCEEHHHHHHHCCCCCCCC >Mature Secondary Structure SYEQQKLIAEAAQAQLRAANFSGSTAKDEPARLRERNAVLTGRPEEPETDADTPEDTPT CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCCCCCCCCCC DPLLAELTPWARHLFQNLQAAGLLDRPQIQDILSRWQQSGGKLTAVIGECTGLKATTVAV CCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHEEE AVRFPVGCRRHSTFKFFADGGYSARLSGCRTVGEHDSSQ EEECCCCCCCCCCEEEEECCCCEEHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA