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The map label for this gene is codA [H]

Identifier: 86608541

GI number: 86608541

Start: 1100688

End: 1102058

Strand: Reverse

Name: codA [H]

Synonym: CYB_1063

Alternate gene names: 86608541

Gene position: 1102058-1100688 (Counterclockwise)

Preceding gene: 86608542

Following gene: 86608533

Centisome position: 36.17

GC content: 61.93

Gene sequence:

>1371_bases
ATGCAGATCCCCGGCGTTGCCCACTACTGGCTGCTGAATGCTCAGGTTCCCCTGTCGGTACTGAAGGAGGCGGTGCCAGG
AGCTGTCCCCAACCGCGATAACCTGGTGTTGCTGGATCTGGAAATCGAAGGGGGGCAGATCCGCCAAATCCAGGCGGCAA
CAGGGATCCCGCCCCAGGGGATCCCCAGCGTGGATCTAAGGCGGGGCCAAGTGTGGCCGTGTTTTGTGGACATCCATACC
CACCTGGACAAGGGGCATGTGTGGCCGCGCACCCCCAATCCCGATGGTACCTTTGCCGGGGCGAGGCAGGCCGGCCAGGA
AGATTGGGTGAAGATGAAGCAAGCCTATGACGGGGATCCGGAGCAGTTTCGGGAGGATCTCTACCGTCGCTTCAGCTTTG
GTTTGCGCTGCAGCTATGCCCATGGATCCCAGGCGGTGCGCACCCATCTGGTCTGTGAGAACCCTCAGGTTATGGGGGCC
AGCTGGGAGGTGTTTGTCCAGTTGCGCCGAGAGTGGGCGGGCAAGCTGGAACTCCAGGCGGTCACGCTTTTGAGCTTGGA
TGCCTTTCTCACCCCTGCAGCAGAAAAGCTGGCGGACAAGGTGGCGGAAGTGGGCGGGATCCTGGGTGGGGTGGCGGCGA
TGGGGCCGGAACTGGATCGGCAATTGGATCGGGTGTTTGCCCTGGCCAAGGAGCGGGGCTTGGCTCTGGACTTTCATACG
GATGAGACGGACGATCCGGGATCCCTCACGTTGAGACACGTGGCAGCGGCGGCCTTGCGCAACGATTTTCCCCATCAGGT
GGTGTGTGGCCATTGCTGTAGCCTGGCCGTGCAACCGCCGGAGGTGGCCCACAAGACTATGGCCTTGGTCAGAGAGGCGG
GAATTGCCGTGGTCAGCCTGCCCATGTGTAATCTCTATTTGCAAGCCCGTAACCCCGGCCATACCCCCCGTTGGCGGGGA
GTGACCCTGCTCCACGAGCTGAAAGCCTTGGGCGTGCCGGTGATGATAGCCAGCGATAACTGTCGGGATCCCTTTTATGG
CTTTGGGGATCACGACGGCCTGGAGGTGTTCCGGGAGGCCACCCGCATTTTGCACCTGGATACCCCCTATGGGGATTGGC
CCCAGGCGATTACCACCACCCCTGCCCGCATCATGGGCTTGACCGAGCGAGGGCAAATTGGGGTGGGCTTGCCGGCAGAT
CTGGTGCTGTTCAAGGGACGTGGCTTTGACGAGCTGCTCTCGCGACCCCAACATGACCGGGTGGTGTTGCGTCAGGGGCA
GGCCATCGACACCACTTTGCCGGACTACAGCGAGCTGGACGACCTAATGGAGAGGGTGGGAGCAGCGGTTAGTTCTGGCT
CCAAGCAGTAG

Upstream 100 bases:

>100_bases
TGCAGGTGGTGGGCCAGTTTGCCTAGCTGCTGTAGCACTGGATTCCTCCTGAGGGGCTCGGATCCCCTTAAGATTGGGAG
TCACTTTTTCGTTGCCCGCC

Downstream 100 bases:

>100_bases
AGCAGGGTTACTTGAATTGCAGCGAAGCAGCTTGGGGATCCCTGGCGTTTCTCCCCAGAGTGGGAAAAATGAAATTTGGA
GTCATGGGGTGGGTCGGTTA

Product: cytosine deaminase-like protein

Products: NA

Alternate protein names: Cytosine aminohydrolase [H]

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MQIPGVAHYWLLNAQVPLSVLKEAVPGAVPNRDNLVLLDLEIEGGQIRQIQAATGIPPQGIPSVDLRRGQVWPCFVDIHT
HLDKGHVWPRTPNPDGTFAGARQAGQEDWVKMKQAYDGDPEQFREDLYRRFSFGLRCSYAHGSQAVRTHLVCENPQVMGA
SWEVFVQLRREWAGKLELQAVTLLSLDAFLTPAAEKLADKVAEVGGILGGVAAMGPELDRQLDRVFALAKERGLALDFHT
DETDDPGSLTLRHVAAAALRNDFPHQVVCGHCCSLAVQPPEVAHKTMALVREAGIAVVSLPMCNLYLQARNPGHTPRWRG
VTLLHELKALGVPVMIASDNCRDPFYGFGDHDGLEVFREATRILHLDTPYGDWPQAITTTPARIMGLTERGQIGVGLPAD
LVLFKGRGFDELLSRPQHDRVVLRQGQAIDTTLPDYSELDDLMERVGAAVSSGSKQ

Sequences:

>Translated_456_residues
MQIPGVAHYWLLNAQVPLSVLKEAVPGAVPNRDNLVLLDLEIEGGQIRQIQAATGIPPQGIPSVDLRRGQVWPCFVDIHT
HLDKGHVWPRTPNPDGTFAGARQAGQEDWVKMKQAYDGDPEQFREDLYRRFSFGLRCSYAHGSQAVRTHLVCENPQVMGA
SWEVFVQLRREWAGKLELQAVTLLSLDAFLTPAAEKLADKVAEVGGILGGVAAMGPELDRQLDRVFALAKERGLALDFHT
DETDDPGSLTLRHVAAAALRNDFPHQVVCGHCCSLAVQPPEVAHKTMALVREAGIAVVSLPMCNLYLQARNPGHTPRWRG
VTLLHELKALGVPVMIASDNCRDPFYGFGDHDGLEVFREATRILHLDTPYGDWPQAITTTPARIMGLTERGQIGVGLPAD
LVLFKGRGFDELLSRPQHDRVVLRQGQAIDTTLPDYSELDDLMERVGAAVSSGSKQ
>Mature_456_residues
MQIPGVAHYWLLNAQVPLSVLKEAVPGAVPNRDNLVLLDLEIEGGQIRQIQAATGIPPQGIPSVDLRRGQVWPCFVDIHT
HLDKGHVWPRTPNPDGTFAGARQAGQEDWVKMKQAYDGDPEQFREDLYRRFSFGLRCSYAHGSQAVRTHLVCENPQVMGA
SWEVFVQLRREWAGKLELQAVTLLSLDAFLTPAAEKLADKVAEVGGILGGVAAMGPELDRQLDRVFALAKERGLALDFHT
DETDDPGSLTLRHVAAAALRNDFPHQVVCGHCCSLAVQPPEVAHKTMALVREAGIAVVSLPMCNLYLQARNPGHTPRWRG
VTLLHELKALGVPVMIASDNCRDPFYGFGDHDGLEVFREATRILHLDTPYGDWPQAITTTPARIMGLTERGQIGVGLPAD
LVLFKGRGFDELLSRPQHDRVVLRQGQAIDTTLPDYSELDDLMERVGAAVSSGSKQ

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786531, Length=408, Percent_Identity=27.6960784313726, Blast_Score=125, Evalue=6e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: =3.5.4.1 [H]

Molecular weight: Translated: 50114; Mature: 50114

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIPGVAHYWLLNAQVPLSVLKEAVPGAVPNRDNLVLLDLEIEGGQIRQIQAATGIPPQG
CCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCC
IPSVDLRRGQVWPCFVDIHTHLDKGHVWPRTPNPDGTFAGARQAGQEDWVKMKQAYDGDP
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCH
EQFREDLYRRFSFGLRCSYAHGSQAVRTHLVCENPQVMGASWEVFVQLRREWAGKLELQA
HHHHHHHHHHHCCCCEEEECCCCHHHHHEEEECCCCEECCHHHHHHHHHHHHCCCEEEEE
VTLLSLDAFLTPAAEKLADKVAEVGGILGGVAAMGPELDRQLDRVFALAKERGLALDFHT
EEEEHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEECC
DETDDPGSLTLRHVAAAALRNDFPHQVVCGHCCSLAVQPPEVAHKTMALVREAGIAVVSL
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE
PMCNLYLQARNPGHTPRWRGVTLLHELKALGVPVMIASDNCRDPFYGFGDHDGLEVFREA
CEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
TRILHLDTPYGDWPQAITTTPARIMGLTERGQIGVGLPADLVLFKGRGFDELLSRPQHDR
HHEEEECCCCCCCCCHHHCCCHHHEECCCCCCCCCCCCCCEEEECCCCHHHHHCCCCCCC
VVLRQGQAIDTTLPDYSELDDLMERVGAAVSSGSKQ
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQIPGVAHYWLLNAQVPLSVLKEAVPGAVPNRDNLVLLDLEIEGGQIRQIQAATGIPPQG
CCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCC
IPSVDLRRGQVWPCFVDIHTHLDKGHVWPRTPNPDGTFAGARQAGQEDWVKMKQAYDGDP
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCH
EQFREDLYRRFSFGLRCSYAHGSQAVRTHLVCENPQVMGASWEVFVQLRREWAGKLELQA
HHHHHHHHHHHCCCCEEEECCCCHHHHHEEEECCCCEECCHHHHHHHHHHHHCCCEEEEE
VTLLSLDAFLTPAAEKLADKVAEVGGILGGVAAMGPELDRQLDRVFALAKERGLALDFHT
EEEEHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEECC
DETDDPGSLTLRHVAAAALRNDFPHQVVCGHCCSLAVQPPEVAHKTMALVREAGIAVVSL
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE
PMCNLYLQARNPGHTPRWRGVTLLHELKALGVPVMIASDNCRDPFYGFGDHDGLEVFREA
CEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
TRILHLDTPYGDWPQAITTTPARIMGLTERGQIGVGLPADLVLFKGRGFDELLSRPQHDR
HHEEEECCCCCCCCCHHHCCCHHHEECCCCCCCCCCCCCCEEEECCCCHHHHHCCCCCCC
VVLRQGQAIDTTLPDYSELDDLMERVGAAVSSGSKQ
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1640834; 8450832; 9278503 [H]