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The map label for this gene is ydcM [C]

Identifier: 86608502

GI number: 86608502

Start: 1064976

End: 1066169

Strand: Reverse

Name: ydcM [C]

Synonym: CYB_1023

Alternate gene names: 86608502

Gene position: 1066169-1064976 (Counterclockwise)

Preceding gene: 86608503

Following gene: 86608501

Centisome position: 34.99

GC content: 54.44

Gene sequence:

>1194_bases
ATGAGCCAAGTCCTGACCATATCCTGTAAGCTCAAGGTGTCCCCGTCGCAAGCCGCCAAATTGGACGCGACGATGGATGC
CTTTGTACAGGCATTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAATCCCTTTGCT
ACTACGAGATTCGAGCCCGGTTTGGCTTGTCCAGTAACTTGGCTCAACAGGTGTGCAGACGGGTAGCGGGTTCCCGCAAA
GTGGCTAAGCAGAAAAAGCGTCCCGTCAAGGAGTTTAAGAGCGGCTTTGTTACCTACGACGCTCGCATCTTTTCGTTCCG
TCAAAAAGACTGGACGGTGTCGCTGACCACGGTGGAAGGGAGAGAACGCTTTGAACTGGTCATTGGCAACTACCAGCGTG
GGATGCTGGCTGGTTCCAACCCAAAAGCTGCCACCCTGGTCAAGCGCAAAGATGGCTCCTACTACATCCAGATTTGCGTA
GAGAAAAAGCCACCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGATTTGGGCAGGACGGATATTGCTCATACATC
GGAAGGAGATCACTGGAATGGACAGCAGTTGAGCAGAGTCCGAGAGCGCTACTCCCGGTTGAGGGCGGTACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGGCTGTCTGGCAAGGAGAGGCGCTTT
CAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGACCACAAACAGCGCTATTGCCCTGGAAGA
CCTGACAGGGATCCGGGAAAGGGTCAATCAACAGCCACGCAACAAAGCCGAGCGGCGCAGGGCCAACAGTTGGGCGTTCT
ACCAGCTTAGGATGTTTGTGGCCTACAAGGCTGCCATCGCCGGAGTGTCTGTAGTACTGGTCCCGCCTGCTTACACGTCG
CAGACCTGTCACAAGTGTTTACACATCCATCCCGATCCTGCGCAATCCTACCGCAGTGGAAAGAAGTTTAAGTGTGGGCA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTCTTGGGGGCTGCCGTAAACCAGCCTAGAG
GTTCGGGCCTGTTTTGTTCTCTGGTAGAGCAGAGCAGGCTCAGGGCTACTGAAAGCCCGCTCCGTACCGCTTAG

Upstream 100 bases:

>100_bases
AGAAACACTGGCATCTTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGCCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGCCGGGTAGTTTACACGCCCGTCCATTCCAAGCCCCGCTACAGCTATCTGCAAAACTATCCGCTCTCTCCCA
CCCCCAAGGCAACAACAGGC

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MSQVLTISCKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRK
VAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELVIGNYQRGMLAGSNPKAATLVKRKDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRTDIAHTSEGDHWNGQQLSRVRERYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRNKAERRRANSWAFYQLRMFVAYKAAIAGVSVVLVPPAYTS
QTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTA

Sequences:

>Translated_397_residues
MSQVLTISCKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRK
VAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELVIGNYQRGMLAGSNPKAATLVKRKDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRTDIAHTSEGDHWNGQQLSRVRERYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRNKAERRRANSWAFYQLRMFVAYKAAIAGVSVVLVPPAYTS
QTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTA
>Mature_396_residues
SQVLTISCKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRKV
AKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELVIGNYQRGMLAGSNPKAATLVKRKDGSYYIQICVE
KKPPKQQDTDKVIGVDLGRTDIAHTSEGDHWNGQQLSRVRERYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRFQ
AWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRNKAERRRANSWAFYQLRMFVAYKAAIAGVSVVLVPPAYTSQ
TCHKCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=232, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44715; Mature: 44584

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTISCKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRAR
CCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCEEEEHHEEEEECCCEEEEEEEECC
RERFELVIGNYQRGMLAGSNPKAATLVKRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDHWNGQQLSRVRERYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRNKAERRRANSWAFYQLRMFV
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
AYKAAIAGVSVVLVPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGAN
HHHHHHHCCEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCEECCCCCCCCCCCCCCCH
VIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SQVLTISCKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRAR
CCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCEEEEHHEEEEECCCEEEEEEEECC
RERFELVIGNYQRGMLAGSNPKAATLVKRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDHWNGQQLSRVRERYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRNKAERRRANSWAFYQLRMFV
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
AYKAAIAGVSVVLVPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGAN
HHHHHHHCCEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCEECCCCCCCCCCCCCCCH
VIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]