| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608477
Identifier: 86608477
GI number: 86608477
Start: 1036444
End: 1038936
Strand: Reverse
Name: 86608477
Synonym: CYB_0998
Alternate gene names: NA
Gene position: 1038936-1036444 (Counterclockwise)
Preceding gene: 86608478
Following gene: 86608476
Centisome position: 34.1
GC content: 62.13
Gene sequence:
>2493_bases ATGAAAAACCCGCTCACGCCCAAAGCCCTTCGCGCCACCGACGCGAACGCGGAACACTGGACTCGGCGACGCCAGGCAGC TTCCCCTCGAAAGAGCAGGCCCCCCCTTTCGGAGCGGATTGCCGGCTATGCCCTCGCGCTTCTCTCCCTCACTGCCGTCC ACGGGATCCGCTACTACAACGAACCACAACTGACCGTCGGCAGCCGTTCTCCGCAGACGTTTCTTGCCCCTGCTGCGGCG GAGATTGAAGATGTGGAGGCTACCCAGGCCCGACAAGCTGAGGCGCGGCGGCGGGTGGTTCAGGCCCTCAAAATCAACAG CACCGCCAACGACAGCATGCGGCAAAATCTGGAGGCTCTCCTGGCTGAGGTGGAGGCCATCCGCCAAGAGGCAGGGCCTC TGCCCTATGTTTCTGTCCAGTTGCTGTCTCTGCCAACGCAGATCTACCTGCGCCAGCTTTCCCCGGAGGAGTGGGAACCC TTCCAGGCTCGCGCCCGACAAGAGGCCATCCGCGGAGCCACCCCATCTCCTTTGGAAGAGCCTTCTTCGGGGCGACCGGA GCAGCTTCCTCCGGAGCAGCGGGCCAAGCAAGAGCTTGTCGAGGTTTGGCAGCGGGTCTGGTTGGATGGATCGGCCACCC AGATGGCGGCGACGGATCCCTATACTCAGCTAATTGCCCAGGTGGAAGCGGCGCAACGGCGCTATCAAGCGGCTTTGCCG GCTCTGGAGCAGCTCACCCCCCCTGTTCCGGCCACAGTTCTCAACTTGGCAGATGCGGATTGGCAGCATTTGCAAACCTT GAGCCGGCGGGTCTTGGAGCGTCTGCAGAAGATAGGGATCGTGGATGGCCTGCCCCGCGAAGTTCGCGCCGAAGGGATCC AAGCCCAACTGGACGATTTGATGTTTCCGGGCAATGCTGCCCAACGACAGGAGTTGCAAGGGCTGGTCTATCAGTGGCTG CAGCAGGTGCTCATTCCCAATGTGGAGGTGGATCCCCAGCGCACCGAGCAGCGCATCCGCGCCGAGCTGGAAAAAGTCGA GCCGGTTCTGATCTCGGTTGCCGAGAACCAGGTGATCGTGCGAGCAGATCAGGTCATCACTCCCGAAATTTTTCTCATCT TGGACCACTTTGGGCTTACCCAGCGCGGGATCAACATCTGGGGCTTGGTGGGAGTGGCCGGAGTGATGGGCATGGGCCTG GCTGTCTTTGTGCCTCTGCAGCAACGCTTGCGGCCAGGGTTGCGCCGCCGGGATCGGGTGTTGATCCTCATGGTTTCCCT GACCGCTCCCCTTTTGGCGGCCTTGTTCAAGCTGGAGTTCAGCTCCCTGCCGGCAGTGGGGCTGTTGCTGGGCAGTTTTT ACGGGGCAGGGCTGGGCTTGGTGGTGGTGGTAGGCCAGGCGCTGTTTTTGCCCTTGGTCTCCCCTGTCAACCTGCTCACC CTTGTACCCTTGCTCTCCAGCAGCGTGGTGGCCTCTGCCCTGGCCGGGCGTTCCCGTTCCCGCGAAGAGCTGGCCTTGTT GGGAGGAGGAGCGGCAGCGGTGCAGATGCTGGCCTACGGGGCGGTTAGCTTGGCCACCACCGGTGGCATCGACCTGTTGG CCATGGCTTTGGCAGGGGGAACCAGCTTGGGATGGAGCATTGTTGCCCTGGGAGCCAGCCCCTACCTGGAGCGCCTATTT GACTTAGCCACCCCCATTCGTCTGATCGAGTTGAGCAATCCCAATCGCACGCTGCTGCGGCGGCTGGCTGCAGAGGCCCC CGGCACCTTCCAGCACACTCTGCTTGTGGCCACTTTGGCAGAACGGGCTGCCCAGAAGCTGAACCTCAACGTGGAGCTGG TGCGCACCGGCACTCTTTACCACGACATCGGCAAGATGCTGCAGGCCCGCTACTTCATCGAGAACCAGATGGGCAGCCTC AACCCCCACACCCAACTGGACGATCCCTATCGCAGTGCTCAGATTATCAAGGCCCACGTCAGCGATGGCTTGCGCCTGGC CAAGCAATATAATCTGCCTACCGCCGTCCAGGCGTTTATCCCTGAGCACCAGGGGACGATCCTGATTGCCTACTTCTACC ATCAAGCCCAGATGAAAGCCGGGGGTCAGCCCGTACCCGAAGAGCCGTTCCGCTACGATGGCCCGATCCCCCAGAGCAAG GAGACGGGGGTGGTGATGATGGCCGATGCCTGTGAAGCCGCCCTGCGCAGCATGACTCTGAGCGATGGCTTCGGCCCCGA TGTGGTCGAGCGGGCAAAAGCTGTTGTCCGCAAAATTGCCCAGGCCCGTTGGCAAGATGGCCAGTTGGTTGATAGTGGGC TGACGCTGGAGGATTTGGAGGTGGTGGCAGACGCTTTCGTGGAGGTCTGGCGGGAATCCAACCACGAGCGCATCCCCTAC CCCAGTTTCACCCCTGCCCCCTCGCTGCCTGAGACTCCTTCTGCTCAGGCCCAGATCCCGGTGTTGATGAGCCCCTCTAC GGGATCCCCTTAG
Upstream 100 bases:
>100_bases AGGTATGGTGGGGCAGATTACCATCGGCGATTGAGATCCTCTTCCTGGGCTACCCGGCCAAAAGGGGATAGAAAAGAGAA AGACGCTGCCAGGCCAATCC
Downstream 100 bases:
>100_bases CCAAGTAACCTCTTCCCGAAGAAGCTGGGTAGGTAGAGAAAGGTCTAGCCCTGCGGCTCATCGATCAGTACGATAGGGGA TCGTTCTGTGGACCCAGTAT
Product: HDIG domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 830; Mature: 830
Protein sequence:
>830_residues MKNPLTPKALRATDANAEHWTRRRQAASPRKSRPPLSERIAGYALALLSLTAVHGIRYYNEPQLTVGSRSPQTFLAPAAA EIEDVEATQARQAEARRRVVQALKINSTANDSMRQNLEALLAEVEAIRQEAGPLPYVSVQLLSLPTQIYLRQLSPEEWEP FQARARQEAIRGATPSPLEEPSSGRPEQLPPEQRAKQELVEVWQRVWLDGSATQMAATDPYTQLIAQVEAAQRRYQAALP ALEQLTPPVPATVLNLADADWQHLQTLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLMFPGNAAQRQELQGLVYQWL QQVLIPNVEVDPQRTEQRIRAELEKVEPVLISVAENQVIVRADQVITPEIFLILDHFGLTQRGINIWGLVGVAGVMGMGL AVFVPLQQRLRPGLRRRDRVLILMVSLTAPLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSPVNLLT LVPLLSSSVVASALAGRSRSREELALLGGGAAAVQMLAYGAVSLATTGGIDLLAMALAGGTSLGWSIVALGASPYLERLF DLATPIRLIELSNPNRTLLRRLAAEAPGTFQHTLLVATLAERAAQKLNLNVELVRTGTLYHDIGKMLQARYFIENQMGSL NPHTQLDDPYRSAQIIKAHVSDGLRLAKQYNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGGQPVPEEPFRYDGPIPQSK ETGVVMMADACEAALRSMTLSDGFGPDVVERAKAVVRKIAQARWQDGQLVDSGLTLEDLEVVADAFVEVWRESNHERIPY PSFTPAPSLPETPSAQAQIPVLMSPSTGSP
Sequences:
>Translated_830_residues MKNPLTPKALRATDANAEHWTRRRQAASPRKSRPPLSERIAGYALALLSLTAVHGIRYYNEPQLTVGSRSPQTFLAPAAA EIEDVEATQARQAEARRRVVQALKINSTANDSMRQNLEALLAEVEAIRQEAGPLPYVSVQLLSLPTQIYLRQLSPEEWEP FQARARQEAIRGATPSPLEEPSSGRPEQLPPEQRAKQELVEVWQRVWLDGSATQMAATDPYTQLIAQVEAAQRRYQAALP ALEQLTPPVPATVLNLADADWQHLQTLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLMFPGNAAQRQELQGLVYQWL QQVLIPNVEVDPQRTEQRIRAELEKVEPVLISVAENQVIVRADQVITPEIFLILDHFGLTQRGINIWGLVGVAGVMGMGL AVFVPLQQRLRPGLRRRDRVLILMVSLTAPLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSPVNLLT LVPLLSSSVVASALAGRSRSREELALLGGGAAAVQMLAYGAVSLATTGGIDLLAMALAGGTSLGWSIVALGASPYLERLF DLATPIRLIELSNPNRTLLRRLAAEAPGTFQHTLLVATLAERAAQKLNLNVELVRTGTLYHDIGKMLQARYFIENQMGSL NPHTQLDDPYRSAQIIKAHVSDGLRLAKQYNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGGQPVPEEPFRYDGPIPQSK ETGVVMMADACEAALRSMTLSDGFGPDVVERAKAVVRKIAQARWQDGQLVDSGLTLEDLEVVADAFVEVWRESNHERIPY PSFTPAPSLPETPSAQAQIPVLMSPSTGSP >Mature_830_residues MKNPLTPKALRATDANAEHWTRRRQAASPRKSRPPLSERIAGYALALLSLTAVHGIRYYNEPQLTVGSRSPQTFLAPAAA EIEDVEATQARQAEARRRVVQALKINSTANDSMRQNLEALLAEVEAIRQEAGPLPYVSVQLLSLPTQIYLRQLSPEEWEP FQARARQEAIRGATPSPLEEPSSGRPEQLPPEQRAKQELVEVWQRVWLDGSATQMAATDPYTQLIAQVEAAQRRYQAALP ALEQLTPPVPATVLNLADADWQHLQTLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLMFPGNAAQRQELQGLVYQWL QQVLIPNVEVDPQRTEQRIRAELEKVEPVLISVAENQVIVRADQVITPEIFLILDHFGLTQRGINIWGLVGVAGVMGMGL AVFVPLQQRLRPGLRRRDRVLILMVSLTAPLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSPVNLLT LVPLLSSSVVASALAGRSRSREELALLGGGAAAVQMLAYGAVSLATTGGIDLLAMALAGGTSLGWSIVALGASPYLERLF DLATPIRLIELSNPNRTLLRRLAAEAPGTFQHTLLVATLAERAAQKLNLNVELVRTGTLYHDIGKMLQARYFIENQMGSL NPHTQLDDPYRSAQIIKAHVSDGLRLAKQYNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGGQPVPEEPFRYDGPIPQSK ETGVVMMADACEAALRSMTLSDGFGPDVVERAKAVVRKIAQARWQDGQLVDSGLTLEDLEVVADAFVEVWRESNHERIPY PSFTPAPSLPETPSAQAQIPVLMSPSTGSP
Specific function: Unknown
COG id: COG1480
COG function: function code R; Predicted membrane-associated HD superfamily hydrolase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011624 - InterPro: IPR011621 - InterPro: IPR003607 - InterPro: IPR006675 [H]
Pfam domain/function: PF07698 7TM-7TMR_HD; PF07697 7TMR-HDED [H]
EC number: NA
Molecular weight: Translated: 90790; Mature: 90790
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNPLTPKALRATDANAEHWTRRRQAASPRKSRPPLSERIAGYALALLSLTAVHGIRYYN CCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC EPQLTVGSRSPQTFLAPAAAEIEDVEATQARQAEARRRVVQALKINSTANDSMRQNLEAL CCCEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH LAEVEAIRQEAGPLPYVSVQLLSLPTQIYLRQLSPEEWEPFQARARQEAIRGATPSPLEE HHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCC PSSGRPEQLPPEQRAKQELVEVWQRVWLDGSATQMAATDPYTQLIAQVEAAQRRYQAALP CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ALEQLTPPVPATVLNLADADWQHLQTLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDL HHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH MFPGNAAQRQELQGLVYQWLQQVLIPNVEVDPQRTEQRIRAELEKVEPVLISVAENQVIV CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHEEEECCCEEEE RADQVITPEIFLILDHFGLTQRGINIWGLVGVAGVMGMGLAVFVPLQQRLRPGLRRRDRV EECCCCCCHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCE LILMVSLTAPLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSPVNLLT EEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHH LVPLLSSSVVASALAGRSRSREELALLGGGAAAVQMLAYGAVSLATTGGIDLLAMALAGG HHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC TSLGWSIVALGASPYLERLFDLATPIRLIELSNPNRTLLRRLAAEAPGTFQHTLLVATLA CCCCCEEEEECCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHH ERAAQKLNLNVELVRTGTLYHDIGKMLQARYFIENQMGSLNPHTQLDDPYRSAQIIKAHV HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH SDGLRLAKQYNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGGQPVPEEPFRYDGPIPQSK HHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCC ETGVVMMADACEAALRSMTLSDGFGPDVVERAKAVVRKIAQARWQDGQLVDSGLTLEDLE CCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHH VVADAFVEVWRESNHERIPYPSFTPAPSLPETPSAQAQIPVLMSPSTGSP HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC >Mature Secondary Structure MKNPLTPKALRATDANAEHWTRRRQAASPRKSRPPLSERIAGYALALLSLTAVHGIRYYN CCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC EPQLTVGSRSPQTFLAPAAAEIEDVEATQARQAEARRRVVQALKINSTANDSMRQNLEAL CCCEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH LAEVEAIRQEAGPLPYVSVQLLSLPTQIYLRQLSPEEWEPFQARARQEAIRGATPSPLEE HHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCC PSSGRPEQLPPEQRAKQELVEVWQRVWLDGSATQMAATDPYTQLIAQVEAAQRRYQAALP CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ALEQLTPPVPATVLNLADADWQHLQTLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDL HHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH MFPGNAAQRQELQGLVYQWLQQVLIPNVEVDPQRTEQRIRAELEKVEPVLISVAENQVIV CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHEEEECCCEEEE RADQVITPEIFLILDHFGLTQRGINIWGLVGVAGVMGMGLAVFVPLQQRLRPGLRRRDRV EECCCCCCHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCE LILMVSLTAPLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSPVNLLT EEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHH LVPLLSSSVVASALAGRSRSREELALLGGGAAAVQMLAYGAVSLATTGGIDLLAMALAGG HHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC TSLGWSIVALGASPYLERLFDLATPIRLIELSNPNRTLLRRLAAEAPGTFQHTLLVATLA CCCCCEEEEECCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHH ERAAQKLNLNVELVRTGTLYHDIGKMLQARYFIENQMGSLNPHTQLDDPYRSAQIIKAHV HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH SDGLRLAKQYNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGGQPVPEEPFRYDGPIPQSK HHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCC ETGVVMMADACEAALRSMTLSDGFGPDVVERAKAVVRKIAQARWQDGQLVDSGLTLEDLE CCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHH VVADAFVEVWRESNHERIPYPSFTPAPSLPETPSAQAQIPVLMSPSTGSP HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]