| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is 86608459
Identifier: 86608459
GI number: 86608459
Start: 1016270
End: 1017004
Strand: Reverse
Name: 86608459
Synonym: CYB_0980
Alternate gene names: NA
Gene position: 1017004-1016270 (Counterclockwise)
Preceding gene: 86608460
Following gene: 86608457
Centisome position: 33.38
GC content: 57.96
Gene sequence:
>735_bases TTGTTGGCAGCAGCGTTCTTTGTCATCGAGTCTCATCGGCAAGTTTGGCCTCAGTCGAATGCTTCTCAAAGTCAGGCATT TTTGGAGTGGGTGTCTTCCCAGCCTACCCCCGAACAGCAGGATGTTTTTGTGGATGGAGTCATTCGGCTGCAATTCAATC GGCCACTGGATCCCAATCTACAACGTCTGGCGGTTCAGTTGGATCCGCCGGCAGCGGTTATTTTTGATGTGCAGGGAGAC GAGTTGTTGCTTAAGCCTCGGGATCCCTTGCGCTTTAGCACCCGTTACACCCTCACGCTTTCTCCCCAAGAGGGGCTGCC CCTCGAGCAGGCCATTCAGCTGAGTTTTCGCACCGAACCGCAATTTACCTACGAACGGGATGTCAAACCGCTGCTAGAAG CCAGTTGTGTGGGTTGCCATCAGCCGGCAGGACGGCAGCGCACCCAGTTGCTGGACAGTTATGAGGCCACGATGGCCTAT GTCAGGCCCGGGGATCCCAATAGCGAGTTGATCAATCCCCGGTGGACGAGCCGCCACGCCTACATCCTCAACGCCATTAA CCCCAACCGCCCCCAAGCTCGCGGCGGATCCCCTGAGATTGCTTACATTCAAGCTCGCGGGCTGCCCCTGTCCCGTCTGG GCTTTTGGACGCCGGAGGAAGTGGAGATCGTCCGCACCTGGATTGTGCAGGATGGCGCCCCCCGCACCAGCGCCCGCTTA CAGATGGGCAAGTAA
Upstream 100 bases:
>100_bases TTCTGACAACAGTTGAATTGGGTCTGCGGCAATGAACACTCCGACCGTGCCAAATGTCTTTCGCCATTGGCGGCGGTGGC GAACTTGGGCGGGGCTGTTG
Downstream 100 bases:
>100_bases ACTACCCGACCCTGACTGCTTCGCAGTACAGGGCGGGCTTTCGGTAGCCCTGCAGTTGGCAAGCCAACCACGAACCTCTA GGCTGGTTTACAGCAGCCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MLAAAFFVIESHRQVWPQSNASQSQAFLEWVSSQPTPEQQDVFVDGVIRLQFNRPLDPNLQRLAVQLDPPAAVIFDVQGD ELLLKPRDPLRFSTRYTLTLSPQEGLPLEQAIQLSFRTEPQFTYERDVKPLLEASCVGCHQPAGRQRTQLLDSYEATMAY VRPGDPNSELINPRWTSRHAYILNAINPNRPQARGGSPEIAYIQARGLPLSRLGFWTPEEVEIVRTWIVQDGAPRTSARL QMGK
Sequences:
>Translated_244_residues MLAAAFFVIESHRQVWPQSNASQSQAFLEWVSSQPTPEQQDVFVDGVIRLQFNRPLDPNLQRLAVQLDPPAAVIFDVQGD ELLLKPRDPLRFSTRYTLTLSPQEGLPLEQAIQLSFRTEPQFTYERDVKPLLEASCVGCHQPAGRQRTQLLDSYEATMAY VRPGDPNSELINPRWTSRHAYILNAINPNRPQARGGSPEIAYIQARGLPLSRLGFWTPEEVEIVRTWIVQDGAPRTSARL QMGK >Mature_244_residues MLAAAFFVIESHRQVWPQSNASQSQAFLEWVSSQPTPEQQDVFVDGVIRLQFNRPLDPNLQRLAVQLDPPAAVIFDVQGD ELLLKPRDPLRFSTRYTLTLSPQEGLPLEQAIQLSFRTEPQFTYERDVKPLLEASCVGCHQPAGRQRTQLLDSYEATMAY VRPGDPNSELINPRWTSRHAYILNAINPNRPQARGGSPEIAYIQARGLPLSRLGFWTPEEVEIVRTWIVQDGAPRTSARL QMGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27631; Mature: 27631
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAAAFFVIESHRQVWPQSNASQSQAFLEWVSSQPTPEQQDVFVDGVIRLQFNRPLDPNL CCEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCCC QRLAVQLDPPAAVIFDVQGDELLLKPRDPLRFSTRYTLTLSPQEGLPLEQAIQLSFRTEP EEEEEEECCCEEEEEEECCCEEEECCCCCCEEEEEEEEEECCCCCCCHHHHEEEEECCCC QFTYERDVKPLLEASCVGCHQPAGRQRTQLLDSYEATMAYVRPGDPNSELINPRWTSRHA CCCHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCEE YILNAINPNRPQARGGSPEIAYIQARGLPLSRLGFWTPEEVEIVRTWIVQDGAPRTSARL EEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCHHHEEEEEEECCCCCCCCCEE QMGK ECCC >Mature Secondary Structure MLAAAFFVIESHRQVWPQSNASQSQAFLEWVSSQPTPEQQDVFVDGVIRLQFNRPLDPNL CCEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCCC QRLAVQLDPPAAVIFDVQGDELLLKPRDPLRFSTRYTLTLSPQEGLPLEQAIQLSFRTEP EEEEEEECCCEEEEEEECCCEEEECCCCCCEEEEEEEEEECCCCCCCHHHHEEEEECCCC QFTYERDVKPLLEASCVGCHQPAGRQRTQLLDSYEATMAYVRPGDPNSELINPRWTSRHA CCCHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCEE YILNAINPNRPQARGGSPEIAYIQARGLPLSRLGFWTPEEVEIVRTWIVQDGAPRTSARL EEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCHHHEEEEEEECCCCCCCCCEE QMGK ECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA