| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608457
Identifier: 86608457
GI number: 86608457
Start: 1013238
End: 1014965
Strand: Reverse
Name: 86608457
Synonym: CYB_0977
Alternate gene names: NA
Gene position: 1014965-1013238 (Counterclockwise)
Preceding gene: 86608459
Following gene: 86608452
Centisome position: 33.31
GC content: 59.38
Gene sequence:
>1728_bases ATGACCCCTCCTCAACCTTTGGCCACCGTGATTCAGGGATCCCTGAGTCGAGGGCTGGAAGCTCGCCTCAATCCCGGTGT CTCGGTAGAAGACTTGCGGGTGGGCAAATTCGTGGTGATCCAGGGGCAGCGCAACCGCTTCTTTGGCCTGCTTACTGACG TTACCCTAGAAACCAGCAACCCCCAAATTCTGGTCAATCCCCCCCGCCCGGAAGAGACCTTGCTGCAGGAGGTGCTGGCC GGTACCGGTACCTATGGCATTATTGCCCTCACCCCGATGCTGATGTTGGTGCCGCGGCAAACGGAAGGGGAAAGGCTGTA TCCCCTGGTCAATCCCGAACGGCCAGAAGCGTTGGCAGCTCCCCTCGGCCAAGAACCCCCTTCCGCTGGCGCCATGGAGC TGCTGCCCGTGAAAACAGTGCCCGCCCATTTTTCACAGGTGTATGAGGCACGGGAACTGGACTTTCGCACCGTCTTCGGT TGGGAAGATGACCCGGAGCGGCGCAACTTTGCTATCGGCCAGCCCCTCGACATGGCTGTGCCCATCTGTTTGGACTTGGA TCGCTGGGTGGAGCGCAGCAACGGCATTTTCGGCAAATCGGGCACCGGCAAGTCCTTTCTAGCCCGCCTGATCCTGGCCG GTATCATCCGCAAACGGGCGGCGGTGAACCTGATCTTTGACATGCACTCCGAGTACGGCTGGGAGGCGGCCAGCGAAGAC AAGCACGCCACTACTGTGAAAGGCTTGCGGCAGCTCTTTCCCGGTCAGGTACAAATCTATACCCTGGATCCCGATTCCAC CCGGCGGCGAGGGGTGCGGGATGCGCAGGAGCTCTTCATCGCCTACAACCAGATCGAGGTGGAGGATCTGGCCCTGTTGG CAGAGGAGCTGAACCTATCGGAAGCCAGCCTGGAAAACGCCATTATCCTGCGCAACGAGTTTGGCCGCGACTGGATCGGC CGCCTCTTGAGCCTTTCCAACACCGAGATTCAAGAGTTTTGCGAACAGAAAATGGGCAACAAAGCCTCGATGATGGCCCT GCAGCGCAAGCTCACCCGCCTTGACAACCTCAAGTACATCCGCAGCACCCTGCCCCACAACTACATCGGCCAGATTTTGG ATGCCCTCAGCCGCGGCATTCACGTGGTTATCGAGTTTGGATCCCAGTCCAACTTGCTTTCCTACATGTTGGCTGCCAAC GTCATCACCCGCCGCATTCACCAGGCCTACGTACATCAGACGGAGCGGTACTTGCAATCCAAAAATCCCCTCGACCGGCC CCGTCAACTATGCATCACCATTGAGGAGGCCCATCGCTTTTTGAATCCGCGGGCGGCCAAGCAGACCATCTTCGGCACCA TTGCCCGCGAGATGCGCAAGTACTTTGTCACGCTGCTAGTGGTGGATCAGCGCCCTTCCCGCATCGACAGCGAGGTGATG TCGCAGTTGGGCACTCGCATTACGGCACTCCTCAACGACGACCAAGATATCGAGGCGGTGTTCACAGGGGTGGCGGGTAG CCAGAACCTGAAAACGGTGTTGGCCAAGCTAGATTCCAAACAACAGGCCCTCCTTCTCGGCCACGCCGTGCCTATGCCGG TGGTGGTGCAAACCCGCTCCTACGACCAAAGGTTCTACGCCGAGATCGCCGACCCCGACTGGTCGCAGGCCGAAGATGCG GAGGTGCTCCTGGCCGCTCAGAAGGCCAAGGAGGAGCTGGGACTTTAG
Upstream 100 bases:
>100_bases ATAACTTCCGCATTCCTCCCGACACTGACCCTACGGGTACAGTGCGGGGCTCCTGCGATTTCTAGCTGAATAAGGCATCT GGAACCCAACCCCCACTGCC
Downstream 100 bases:
>100_bases GGAGAGCTCCCCCAAAGTCCCGTCATCAAGCACAGCAGCAAGCACCGCAGGGGGGGGAAGGCCATCATCCCTCTCAGGAT CCACCGCCGCATAACCACTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 575; Mature: 574
Protein sequence:
>575_residues MTPPQPLATVIQGSLSRGLEARLNPGVSVEDLRVGKFVVIQGQRNRFFGLLTDVTLETSNPQILVNPPRPEETLLQEVLA GTGTYGIIALTPMLMLVPRQTEGERLYPLVNPERPEALAAPLGQEPPSAGAMELLPVKTVPAHFSQVYEARELDFRTVFG WEDDPERRNFAIGQPLDMAVPICLDLDRWVERSNGIFGKSGTGKSFLARLILAGIIRKRAAVNLIFDMHSEYGWEAASED KHATTVKGLRQLFPGQVQIYTLDPDSTRRRGVRDAQELFIAYNQIEVEDLALLAEELNLSEASLENAIILRNEFGRDWIG RLLSLSNTEIQEFCEQKMGNKASMMALQRKLTRLDNLKYIRSTLPHNYIGQILDALSRGIHVVIEFGSQSNLLSYMLAAN VITRRIHQAYVHQTERYLQSKNPLDRPRQLCITIEEAHRFLNPRAAKQTIFGTIAREMRKYFVTLLVVDQRPSRIDSEVM SQLGTRITALLNDDQDIEAVFTGVAGSQNLKTVLAKLDSKQQALLLGHAVPMPVVVQTRSYDQRFYAEIADPDWSQAEDA EVLLAAQKAKEELGL
Sequences:
>Translated_575_residues MTPPQPLATVIQGSLSRGLEARLNPGVSVEDLRVGKFVVIQGQRNRFFGLLTDVTLETSNPQILVNPPRPEETLLQEVLA GTGTYGIIALTPMLMLVPRQTEGERLYPLVNPERPEALAAPLGQEPPSAGAMELLPVKTVPAHFSQVYEARELDFRTVFG WEDDPERRNFAIGQPLDMAVPICLDLDRWVERSNGIFGKSGTGKSFLARLILAGIIRKRAAVNLIFDMHSEYGWEAASED KHATTVKGLRQLFPGQVQIYTLDPDSTRRRGVRDAQELFIAYNQIEVEDLALLAEELNLSEASLENAIILRNEFGRDWIG RLLSLSNTEIQEFCEQKMGNKASMMALQRKLTRLDNLKYIRSTLPHNYIGQILDALSRGIHVVIEFGSQSNLLSYMLAAN VITRRIHQAYVHQTERYLQSKNPLDRPRQLCITIEEAHRFLNPRAAKQTIFGTIAREMRKYFVTLLVVDQRPSRIDSEVM SQLGTRITALLNDDQDIEAVFTGVAGSQNLKTVLAKLDSKQQALLLGHAVPMPVVVQTRSYDQRFYAEIADPDWSQAEDA EVLLAAQKAKEELGL >Mature_574_residues TPPQPLATVIQGSLSRGLEARLNPGVSVEDLRVGKFVVIQGQRNRFFGLLTDVTLETSNPQILVNPPRPEETLLQEVLAG TGTYGIIALTPMLMLVPRQTEGERLYPLVNPERPEALAAPLGQEPPSAGAMELLPVKTVPAHFSQVYEARELDFRTVFGW EDDPERRNFAIGQPLDMAVPICLDLDRWVERSNGIFGKSGTGKSFLARLILAGIIRKRAAVNLIFDMHSEYGWEAASEDK HATTVKGLRQLFPGQVQIYTLDPDSTRRRGVRDAQELFIAYNQIEVEDLALLAEELNLSEASLENAIILRNEFGRDWIGR LLSLSNTEIQEFCEQKMGNKASMMALQRKLTRLDNLKYIRSTLPHNYIGQILDALSRGIHVVIEFGSQSNLLSYMLAANV ITRRIHQAYVHQTERYLQSKNPLDRPRQLCITIEEAHRFLNPRAAKQTIFGTIAREMRKYFVTLLVVDQRPSRIDSEVMS QLGTRITALLNDDQDIEAVFTGVAGSQNLKTVLAKLDSKQQALLLGHAVPMPVVVQTRSYDQRFYAEIADPDWSQAEDAE VLLAAQKAKEELGL
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJECL08 and MJ1429 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008571 - InterPro: IPR002789 - InterPro: IPR018538 [H]
Pfam domain/function: PF05872 DUF853; PF01935 DUF87; PF09378 HAS-barrel [H]
EC number: NA
Molecular weight: Translated: 64503; Mature: 64372
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: PS00037 MYB_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPPQPLATVIQGSLSRGLEARLNPGVSVEDLRVGKFVVIQGQRNRFFGLLTDVTLETSN CCCCHHHHHHHHHHHHCCCHHHCCCCCCCEEEECCEEEEEECCCCCEEEEEEEEEEECCC PQILVNPPRPEETLLQEVLAGTGTYGIIALTPMLMLVPRQTEGERLYPLVNPERPEALAA CEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHC PLGQEPPSAGAMELLPVKTVPAHFSQVYEARELDFRTVFGWEDDPERRNFAIGQPLDMAV CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHHH PICLDLDRWVERSNGIFGKSGTGKSFLARLILAGIIRKRAAVNLIFDMHSEYGWEAASED HHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC KHATTVKGLRQLFPGQVQIYTLDPDSTRRRGVRDAQELFIAYNQIEVEDLALLAEELNLS CHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC EASLENAIILRNEFGRDWIGRLLSLSNTEIQEFCEQKMGNKASMMALQRKLTRLDNLKYI HHHHCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH RSTLPHNYIGQILDALSRGIHVVIEFGSQSNLLSYMLAANVITRRIHQAYVHQTERYLQS HHHCCHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KNPLDRPRQLCITIEEAHRFLNPRAAKQTIFGTIAREMRKYFVTLLVVDQRPSRIDSEVM CCCCCCHHHHEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEHEEECCCCCCCHHHHH SQLGTRITALLNDDQDIEAVFTGVAGSQNLKTVLAKLDSKQQALLLGHAVPMPVVVQTRS HHHHHHEEEHCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCC YDQRFYAEIADPDWSQAEDAEVLLAAQKAKEELGL CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure TPPQPLATVIQGSLSRGLEARLNPGVSVEDLRVGKFVVIQGQRNRFFGLLTDVTLETSN CCCHHHHHHHHHHHHCCCHHHCCCCCCCEEEECCEEEEEECCCCCEEEEEEEEEEECCC PQILVNPPRPEETLLQEVLAGTGTYGIIALTPMLMLVPRQTEGERLYPLVNPERPEALAA CEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHC PLGQEPPSAGAMELLPVKTVPAHFSQVYEARELDFRTVFGWEDDPERRNFAIGQPLDMAV CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHHH PICLDLDRWVERSNGIFGKSGTGKSFLARLILAGIIRKRAAVNLIFDMHSEYGWEAASED HHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC KHATTVKGLRQLFPGQVQIYTLDPDSTRRRGVRDAQELFIAYNQIEVEDLALLAEELNLS CHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC EASLENAIILRNEFGRDWIGRLLSLSNTEIQEFCEQKMGNKASMMALQRKLTRLDNLKYI HHHHCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH RSTLPHNYIGQILDALSRGIHVVIEFGSQSNLLSYMLAANVITRRIHQAYVHQTERYLQS HHHCCHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KNPLDRPRQLCITIEEAHRFLNPRAAKQTIFGTIAREMRKYFVTLLVVDQRPSRIDSEVM CCCCCCHHHHEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEHEEECCCCCCCHHHHH SQLGTRITALLNDDQDIEAVFTGVAGSQNLKTVLAKLDSKQQALLLGHAVPMPVVVQTRS HHHHHHEEEHCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCC YDQRFYAEIADPDWSQAEDAEVLLAAQKAKEELGL CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]