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The map label for this gene is yhdX [H]

Identifier: 86608411

GI number: 86608411

Start: 969539

End: 970711

Strand: Reverse

Name: yhdX [H]

Synonym: CYB_0931

Alternate gene names: 86608411

Gene position: 970711-969539 (Counterclockwise)

Preceding gene: 86608412

Following gene: 86608410

Centisome position: 31.86

GC content: 61.89

Gene sequence:

>1173_bases
ATGACTTCTCTGTCCGACCAGTCCCACCTTCGCCCCCCCTGGTGGCGGAATGAGCGCATCCTAAAAGTTCTGCTGCAGGT
GGCCTTTGTCGTGGCCGTGCTGCTGGTGTTCGGGATCCTCGCCCAAAATCTCCTCGCCAGCATGCGTCGCCTGGGCATCA
GCTTGGGATTCCGCTTTTTGGGCAACTCTGCCAACTTTGGGATCACCGAGGGGCTGATCCCCTACGACCCTTCCGAGAGC
TACCTGAAGGCTCTGGCGGTGGGAGCGGTGAACACCCTCTGGCTGTCGGCAGTCAGCATTGTGTTGGCGACGGCGATGGG
CTTTGTCCTGGGGATGGCTCGCCTCTCCAGCAACTGGCTGGCCCGCCAATTGGCTACCGTCATCACCGAGATCTTTCGCA
ATGTCCCGGTGCTGCTGATCGTGATCTTCTGGTACCAGGGGGTGATCCTCACTCTGCCGGGGGTGCGCAACAGTCTCTCC
ATCGGCGGGCTTGTCTTTATCAACCAGCGGGGAGTGAAGCTGCCCGGGTTGGATCCCAGCGGCTGGCTGGTTCCCGCGCT
GGCCATTGTAATCGCGGCTGGGTGGGGGATCCGCAAGCTGCTCCTGGCCCGTCGCCCCGAGCTGGGATCCCGGCAGCGGA
ACCTGTGGGTGGCTGCGGGGGTGGCGCTGCTGGCGGTGGCCTGCTGGGTGCTCTTCCCAGAGCCGCCGGTGCGGCTGGAT
GTCCCGGTACTGGAGCGCTTTAACTTCCGGGGCGGGATCCAACTTTCGGCGGAGTTTACCGCCATGATGCTGGGCTTGGT
GACCTACACCGGCTGCTACATTGCCGAAGTGGTGCGGGGATCCTTTTTGGCGGTGCCGCGGGGGCAGTGGGAGGCGGCCC
GGGCCGTCGGCCTGTCGGAGCTGCAAACCTTTCGCTTGGTGATTGTGCCCCAGGCCCTGCGGATCATGATCCCCTCGTTG
AACACTCAGTATCTCACCCTGATCAAAAACTCCAGCTTGGCCATTGCCGTTGGCTTTTCCGATCTGTTCAACATCAGCAG
CACCATCATCAATCAGTCGGGACGCTCGGTGGAGATGTTCGCCATCCTCATGGCCACCTATCTGACCTTCAACCTGGTGG
TTTCCTACGGCATGAACTGGCTCAATGCCCGCGTCAAATTGGTGGAGCGCTAA

Upstream 100 bases:

>100_bases
GATCGGCTGATTCGGAATCCGGGCCTAGGGATCCCGGTTGGTCAGTACCGGCCAGGGATCCCCTATTCTCTGCTGTGCTC
TGAATTTTTGCTTGCCCCGC

Downstream 100 bases:

>100_bases
CCCATGCCCAGCAGTCTCTCCTCTCCGCTTATAGAAGAAGAAAAGGTACTCCCCCCCACGGAGAAACAAAGTCCGCTGGC
TTGGGTGCGTCGCAACCTGT

Product: polar amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MTSLSDQSHLRPPWWRNERILKVLLQVAFVVAVLLVFGILAQNLLASMRRLGISLGFRFLGNSANFGITEGLIPYDPSES
YLKALAVGAVNTLWLSAVSIVLATAMGFVLGMARLSSNWLARQLATVITEIFRNVPVLLIVIFWYQGVILTLPGVRNSLS
IGGLVFINQRGVKLPGLDPSGWLVPALAIVIAAGWGIRKLLLARRPELGSRQRNLWVAAGVALLAVACWVLFPEPPVRLD
VPVLERFNFRGGIQLSAEFTAMMLGLVTYTGCYIAEVVRGSFLAVPRGQWEAARAVGLSELQTFRLVIVPQALRIMIPSL
NTQYLTLIKNSSLAIAVGFSDLFNISSTIINQSGRSVEMFAILMATYLTFNLVVSYGMNWLNARVKLVER

Sequences:

>Translated_390_residues
MTSLSDQSHLRPPWWRNERILKVLLQVAFVVAVLLVFGILAQNLLASMRRLGISLGFRFLGNSANFGITEGLIPYDPSES
YLKALAVGAVNTLWLSAVSIVLATAMGFVLGMARLSSNWLARQLATVITEIFRNVPVLLIVIFWYQGVILTLPGVRNSLS
IGGLVFINQRGVKLPGLDPSGWLVPALAIVIAAGWGIRKLLLARRPELGSRQRNLWVAAGVALLAVACWVLFPEPPVRLD
VPVLERFNFRGGIQLSAEFTAMMLGLVTYTGCYIAEVVRGSFLAVPRGQWEAARAVGLSELQTFRLVIVPQALRIMIPSL
NTQYLTLIKNSSLAIAVGFSDLFNISSTIINQSGRSVEMFAILMATYLTFNLVVSYGMNWLNARVKLVER
>Mature_389_residues
TSLSDQSHLRPPWWRNERILKVLLQVAFVVAVLLVFGILAQNLLASMRRLGISLGFRFLGNSANFGITEGLIPYDPSESY
LKALAVGAVNTLWLSAVSIVLATAMGFVLGMARLSSNWLARQLATVITEIFRNVPVLLIVIFWYQGVILTLPGVRNSLSI
GGLVFINQRGVKLPGLDPSGWLVPALAIVIAAGWGIRKLLLARRPELGSRQRNLWVAAGVALLAVACWVLFPEPPVRLDV
PVLERFNFRGGIQLSAEFTAMMLGLVTYTGCYIAEVVRGSFLAVPRGQWEAARAVGLSELQTFRLVIVPQALRIMIPSLN
TQYLTLIKNSSLAIAVGFSDLFNISSTIINQSGRSVEMFAILMATYLTFNLVVSYGMNWLNARVKLVER

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=357, Percent_Identity=41.1764705882353, Blast_Score=262, Evalue=3e-71,
Organism=Escherichia coli, GI1787030, Length=130, Percent_Identity=37.6923076923077, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788226, Length=119, Percent_Identity=34.453781512605, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082239, Length=125, Percent_Identity=35.2, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1786873, Length=122, Percent_Identity=32.7868852459016, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1786874, Length=129, Percent_Identity=30.2325581395349, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787087, Length=159, Percent_Identity=27.6729559748428, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788645, Length=126, Percent_Identity=30.1587301587302, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 42855; Mature: 42723

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLSDQSHLRPPWWRNERILKVLLQVAFVVAVLLVFGILAQNLLASMRRLGISLGFRFL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GNSANFGITEGLIPYDPSESYLKALAVGAVNTLWLSAVSIVLATAMGFVLGMARLSSNWL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARQLATVITEIFRNVPVLLIVIFWYQGVILTLPGVRNSLSIGGLVFINQRGVKLPGLDPS
HHHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCC
GWLVPALAIVIAAGWGIRKLLLARRPELGSRQRNLWVAAGVALLAVACWVLFPEPPVRLD
CHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
VPVLERFNFRGGIQLSAEFTAMMLGLVTYTGCYIAEVVRGSFLAVPRGQWEAARAVGLSE
CHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCHHH
LQTFRLVIVPQALRIMIPSLNTQYLTLIKNSSLAIAVGFSDLFNISSTIINQSGRSVEMF
HHHHHEEEEHHHHHHHHCCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHCCCCCHHHHH
AILMATYLTFNLVVSYGMNWLNARVKLVER
HHHHHHHHHHHHHHHHCCHHHHHHHHEECC
>Mature Secondary Structure 
TSLSDQSHLRPPWWRNERILKVLLQVAFVVAVLLVFGILAQNLLASMRRLGISLGFRFL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GNSANFGITEGLIPYDPSESYLKALAVGAVNTLWLSAVSIVLATAMGFVLGMARLSSNWL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARQLATVITEIFRNVPVLLIVIFWYQGVILTLPGVRNSLSIGGLVFINQRGVKLPGLDPS
HHHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCC
GWLVPALAIVIAAGWGIRKLLLARRPELGSRQRNLWVAAGVALLAVACWVLFPEPPVRLD
CHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
VPVLERFNFRGGIQLSAEFTAMMLGLVTYTGCYIAEVVRGSFLAVPRGQWEAARAVGLSE
CHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCHHH
LQTFRLVIVPQALRIMIPSLNTQYLTLIKNSSLAIAVGFSDLFNISSTIINQSGRSVEMF
HHHHHEEEEHHHHHHHHCCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHCCCCCHHHHH
AILMATYLTFNLVVSYGMNWLNARVKLVER
HHHHHHHHHHHHHHHHCCHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]