Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608405
Identifier: 86608405
GI number: 86608405
Start: 962550
End: 964145
Strand: Reverse
Name: 86608405
Synonym: CYB_0925
Alternate gene names: NA
Gene position: 964145-962550 (Counterclockwise)
Preceding gene: 86608406
Following gene: 86608404
Centisome position: 31.65
GC content: 64.6
Gene sequence:
>1596_bases ATGATCCAGCCATCCAACTGCAAACTCGACCCCTGGGTCGCGGTAGCGGTGCGGAGCACTTGCGGCTGGGCGCTGCTGCT GATTTTGTCGGTTGGTTTTTTGGGGGGATGTGCTGACGACCCGGTTTCTACAGTCCCTCTGGATGGCGCTGCTGTCGGCA CGCGGACGGCCACTCCCGAAGGCCGATCCTTTTCCGATATTCAGCCTGGTCGGGAGCCCCGTCTGAAACACCTTTGGGCC AGTTTTGTCATCACTGCTGAGCAACTGCAATCCGCCCGCGAGGCTCCCGTTTCGCTCCATCCGCAGGCCATTTTTCCCTG CACCGACTGCGAAAGCCTACCGGGATCCCCGCCCCCCACTGCTTCCCCCGCTCCAGGCACCTACCGATCTGACCAGATCA CCTTCTCCTTCCGGGTTGAGCCCAATGAGACGTCCACCCGCCTCAGGGGTAGCTTTCACCTGGATACCACCACGCCTCTG ATCCACCCCGGCGCAGGGGTGCGCTTGGTAATCCAACGGGCTTTCTGGGGGGAAGACCCGCTGGAACCGCTGCCACCTCC CCAGGACTTTCACCCTCAGCAGATCATCCGAGGCCAGTTCCAGGAGCGCAGTTGGATCCTCCCTTTCTCCCTGCCGCATC CCCCTGCCGGTGAGGTCTTGCCGCCGCTGCGGCTGGAGGTTGTTCTCACCTCGCCGATCCCACCCGATTCCGCCCCCTTT CTGCGGGGTAGGCCGCTGCCGCCACCTCCGGGTCGGCTGTATCACGGGGTCGCTTGGCCGGGCATTCCCACTTGGGATCA ACTCCTCGCCTATCGCCAGGCCATTGGTCAGCCCCCCGCCTGGGCAGCCGTGGATCACCTCTGGGATCCCCGCCAGGACT TTCCGCAGCAGTTGGCCAGTCGCCTGCGGGAAAGCGGCTCAGTCCCCTACCTGCGCCTGCGGCTAGATCCGGCCCAACTT TCTGCCTTGGCCAATGGGGATCACGATGAGACCTTGCGCTCTTGGGCCCGCGGGATCCAGCGCTTTGCCACCCCCATCAT CCTGGCCGTCGTTGTTGGCGACGGGGATCCCGAACGCGCTCGCGGTAGCGGTGGGGAGCCCTTTGGTGGGACGGAGTCCT CGCTGCAACAACGGGCTTACCAACACCTGATGCAAACCCTGCGCTCTGTTCGCGTTAGCGGGACGGAGTCCCCGGCCAAT TTGCTCTGGGTGGTGGAGCTGGACGGAGAAGATGCCAAGGCCGTGTCCACCTGGGCTCGGTTCCCTGAGATGGACTGGCT GAGCCTACAGGTAACGGGGGATCCCGCCGCTTTTGAACCGCTGTACCGCCGCCTTGAGGCCCTCAACCCGAAAGTGCCTG TGGTGATCCGCGGGCCGGCTCCGGGCTCAGCAACCTCTCAACCGCTGCTGGAAGGTCTGGAGGCGCAGCGCTGGCCTCAG GTGATCGGCTGGAGCTGGACTTTAAGCCCGGACGGGATCCCTCCTGCAGCCGCACAAGATTGGCGGCAGCATCTGCAACA GGGGGATCCCCAGATATGGCTGGGGGAAATGCGGGTGCAGCCCCCGCCCAGCCCCCTTCCCTCGCCCAAGCCTTGA
Upstream 100 bases:
>100_bases TTTGCGTTGGTGCCCCGTCGGGAACCGCACCGTCCACAAGACGAGAGCGGCATCGACTCCCTTCGGTAGCCGGGCAGGAG TGGTGTATTGAGGTGAGATC
Downstream 100 bases:
>100_bases GAAAGGACGACCTGTCTGGAAAAACCTCCCGGAAAAGTCGATAATAAGCCAGCCGTTTTACCTTTCCTTCAGGAATTGTG GCCCTGATCCCCTCATCACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 531; Mature: 531
Protein sequence:
>531_residues MIQPSNCKLDPWVAVAVRSTCGWALLLILSVGFLGGCADDPVSTVPLDGAAVGTRTATPEGRSFSDIQPGREPRLKHLWA SFVITAEQLQSAREAPVSLHPQAIFPCTDCESLPGSPPPTASPAPGTYRSDQITFSFRVEPNETSTRLRGSFHLDTTTPL IHPGAGVRLVIQRAFWGEDPLEPLPPPQDFHPQQIIRGQFQERSWILPFSLPHPPAGEVLPPLRLEVVLTSPIPPDSAPF LRGRPLPPPPGRLYHGVAWPGIPTWDQLLAYRQAIGQPPAWAAVDHLWDPRQDFPQQLASRLRESGSVPYLRLRLDPAQL SALANGDHDETLRSWARGIQRFATPIILAVVVGDGDPERARGSGGEPFGGTESSLQQRAYQHLMQTLRSVRVSGTESPAN LLWVVELDGEDAKAVSTWARFPEMDWLSLQVTGDPAAFEPLYRRLEALNPKVPVVIRGPAPGSATSQPLLEGLEAQRWPQ VIGWSWTLSPDGIPPAAAQDWRQHLQQGDPQIWLGEMRVQPPPSPLPSPKP
Sequences:
>Translated_531_residues MIQPSNCKLDPWVAVAVRSTCGWALLLILSVGFLGGCADDPVSTVPLDGAAVGTRTATPEGRSFSDIQPGREPRLKHLWA SFVITAEQLQSAREAPVSLHPQAIFPCTDCESLPGSPPPTASPAPGTYRSDQITFSFRVEPNETSTRLRGSFHLDTTTPL IHPGAGVRLVIQRAFWGEDPLEPLPPPQDFHPQQIIRGQFQERSWILPFSLPHPPAGEVLPPLRLEVVLTSPIPPDSAPF LRGRPLPPPPGRLYHGVAWPGIPTWDQLLAYRQAIGQPPAWAAVDHLWDPRQDFPQQLASRLRESGSVPYLRLRLDPAQL SALANGDHDETLRSWARGIQRFATPIILAVVVGDGDPERARGSGGEPFGGTESSLQQRAYQHLMQTLRSVRVSGTESPAN LLWVVELDGEDAKAVSTWARFPEMDWLSLQVTGDPAAFEPLYRRLEALNPKVPVVIRGPAPGSATSQPLLEGLEAQRWPQ VIGWSWTLSPDGIPPAAAQDWRQHLQQGDPQIWLGEMRVQPPPSPLPSPKP >Mature_531_residues MIQPSNCKLDPWVAVAVRSTCGWALLLILSVGFLGGCADDPVSTVPLDGAAVGTRTATPEGRSFSDIQPGREPRLKHLWA SFVITAEQLQSAREAPVSLHPQAIFPCTDCESLPGSPPPTASPAPGTYRSDQITFSFRVEPNETSTRLRGSFHLDTTTPL IHPGAGVRLVIQRAFWGEDPLEPLPPPQDFHPQQIIRGQFQERSWILPFSLPHPPAGEVLPPLRLEVVLTSPIPPDSAPF LRGRPLPPPPGRLYHGVAWPGIPTWDQLLAYRQAIGQPPAWAAVDHLWDPRQDFPQQLASRLRESGSVPYLRLRLDPAQL SALANGDHDETLRSWARGIQRFATPIILAVVVGDGDPERARGSGGEPFGGTESSLQQRAYQHLMQTLRSVRVSGTESPAN LLWVVELDGEDAKAVSTWARFPEMDWLSLQVTGDPAAFEPLYRRLEALNPKVPVVIRGPAPGSATSQPLLEGLEAQRWPQ VIGWSWTLSPDGIPPAAAQDWRQHLQQGDPQIWLGEMRVQPPPSPLPSPKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58149; Mature: 58149
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIQPSNCKLDPWVAVAVRSTCGWALLLILSVGFLGGCADDPVSTVPLDGAAVGTRTATPE CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC GRSFSDIQPGREPRLKHLWASFVITAEQLQSAREAPVSLHPQAIFPCTDCESLPGSPPPT CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEECCCCCCCCCCCCCCC ASPAPGTYRSDQITFSFRVEPNETSTRLRGSFHLDTTTPLIHPGAGVRLVIQRAFWGEDP CCCCCCCCCCCEEEEEEEECCCCCCHHEEEEEEECCCCCEECCCCCCEEEEEHHHCCCCC LEPLPPPQDFHPQQIIRGQFQERSWILPFSLPHPPAGEVLPPLRLEVVLTSPIPPDSAPF CCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCC LRGRPLPPPPGRLYHGVAWPGIPTWDQLLAYRQAIGQPPAWAAVDHLWDPRQDFPQQLAS CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHH RLRESGSVPYLRLRLDPAQLSALANGDHDETLRSWARGIQRFATPIILAVVVGDGDPERA HHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHC RGSGGEPFGGTESSLQQRAYQHLMQTLRSVRVSGTESPANLLWVVELDGEDAKAVSTWAR CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHH FPEMDWLSLQVTGDPAAFEPLYRRLEALNPKVPVVIRGPAPGSATSQPLLEGLEAQRWPQ CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCHH VIGWSWTLSPDGIPPAAAQDWRQHLQQGDPQIWLGEMRVQPPPSPLPSPKP HHCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEECEECCCCCCCCCCCCC >Mature Secondary Structure MIQPSNCKLDPWVAVAVRSTCGWALLLILSVGFLGGCADDPVSTVPLDGAAVGTRTATPE CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC GRSFSDIQPGREPRLKHLWASFVITAEQLQSAREAPVSLHPQAIFPCTDCESLPGSPPPT CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEECCCCCCCCCCCCCCC ASPAPGTYRSDQITFSFRVEPNETSTRLRGSFHLDTTTPLIHPGAGVRLVIQRAFWGEDP CCCCCCCCCCCEEEEEEEECCCCCCHHEEEEEEECCCCCEECCCCCCEEEEEHHHCCCCC LEPLPPPQDFHPQQIIRGQFQERSWILPFSLPHPPAGEVLPPLRLEVVLTSPIPPDSAPF CCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCC LRGRPLPPPPGRLYHGVAWPGIPTWDQLLAYRQAIGQPPAWAAVDHLWDPRQDFPQQLAS CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHH RLRESGSVPYLRLRLDPAQLSALANGDHDETLRSWARGIQRFATPIILAVVVGDGDPERA HHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHC RGSGGEPFGGTESSLQQRAYQHLMQTLRSVRVSGTESPANLLWVVELDGEDAKAVSTWAR CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHH FPEMDWLSLQVTGDPAAFEPLYRRLEALNPKVPVVIRGPAPGSATSQPLLEGLEAQRWPQ CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCHH VIGWSWTLSPDGIPPAAAQDWRQHLQQGDPQIWLGEMRVQPPPSPLPSPKP HHCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEECEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA