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The map label for this gene is psbC [H]

Identifier: 86608335

GI number: 86608335

Start: 886556

End: 887974

Strand: Reverse

Name: psbC [H]

Synonym: CYB_0853

Alternate gene names: 86608335

Gene position: 887974-886556 (Counterclockwise)

Preceding gene: 86608336

Following gene: 86608334

Centisome position: 29.15

GC content: 59.62

Gene sequence:

>1419_bases
GTGTCTCTTGTTCCTGACTATCATTGGAGGTTGGTCTCTGTGACCTCGACAACATTTGGTTCTGCAGTGGTGCAAGATCG
CACCCAAGGCGGATTTGCCTGGTGGGCTGGGAATGCCCGCTTGATTAATCTCTCCGGTCGGCTTTTGGGCGCCCATGTGG
CTCACGCTGGCCTGATCGTCTTCTGGGCGGGGGCGATGCTGCTGTTTGAGGTGGCTCACTTCACGCCGGATCGGCCTATG
TATGAGCAGGGCCTGATCCTGATGCCCCACGTGGCCACTCTGGGCTGGGGGGTTGGCCCGGGGGGCGAGGTGATTGACAC
CTACCCCTACTTTGTCATCGGGGTGCTGCACCTGATCTCCAGCGCCGTGCTGGGGTTGGGGGGCATTTATCACGCCATTC
GCGGCCCAGAAACTCTGGAGCAGTCTTTCCCCTTCTTCGGCTACGACTGGAAAGACAAGAACAAGATGACCACCATCCTG
GGGATCCACCTGATCCTGTTGGGGTTGGGGGCTTTCCTATTGGTGGCCAAGGCCATGTGGTTTGGCGGTGTCTATGACAC
CTGGGCTCCAGGGGGTGGCGATGTGCGGGTAATTACCAACCCCACCTTGAACCCCGCTGTGATCTTCGGCTACTTGTTCA
AATCTCCCTTTGGTGGGGAAGGCTGGATCATCAGCGTCGACAACATGGAGGATGTAATCGGTGGCCACATTTACATCGGC
ATTATCTGCATTGCCGGTGGGATCTGGCACATCCTCACCAAGCCCTTCGGTTGGGCCCGCCGCGCCTTCATCTGGTCTGG
GGAGGCCTATCTCTCCTACAGCTTGGCGGCGGTTTCCCTGATGAGCTTCATTGCCACCTGCTACATCTGGTTCAACAACA
CCGTCTACCCCAGCGAGTTCTACGGCCCCACTGGCCCAGAAGCCTCGCAAGCGCAAGCCCTCACCTTCATCGTGCGCGAC
CAGCGCTTGGGGGCCAACATTGGCCAAGCCCAAGGTCCCACCGGTCTGGGTAAATACCTGATGCGCTCCCCTACGGGCGA
GATCATCTTCGGCGGCGAGACGATGCGCTTCTGGGATGTGCGGGCTCCCTGGAAAGAGCCGCTGCTGGGCCCCAATGGGT
TGGATCTGGATAAGCTGAAAAACGACATTCAGCCCTGGCAAGCCCGCCGTGCAGTGGAGTACATGACCCATGCGCCGCTG
GGATCCCTGAACTCGGTGGGTGGTGTGGCTACCGAGATCAACACGGTGAACTTCACCAGCCCGCGCACCTGGTTGGCCGC
TCACAACTTCATCTTCGGCTTCCTGTTCTTTGTCGGCCACCTGTGGCATGCCGGTCGCGCTCGCGCTGCCGCTGCTGGCT
TTGAGAAAGGGATAAGCCGCGAGAACGAGCCGGTTTACCGGATGAAGCCGATCCGCTAA

Upstream 100 bases:

>100_bases
GCTCTGTGAGGATGAGCGCTTGCCCAAGGGATCCCCTGCCGCGGATCCCAGTGGACAGGGAGCCCAACGGCAGGCGCTCG
CGTTAACTAAACTTTTTTTG

Downstream 100 bases:

>100_bases
CTTTGGGTTAGCACAACGGTCTCAATGGTTTGGCTTGGCCCCCATACCGGGGGCCTTTTTTGGGCATCCCCCCCTCAAGG
ATTGGCAGAAAGAAAGTTTG

Product: photosystem II 44 kDa subunit reaction center protein

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MSLVPDYHWRLVSVTSTTFGSAVVQDRTQGGFAWWAGNARLINLSGRLLGAHVAHAGLIVFWAGAMLLFEVAHFTPDRPM
YEQGLILMPHVATLGWGVGPGGEVIDTYPYFVIGVLHLISSAVLGLGGIYHAIRGPETLEQSFPFFGYDWKDKNKMTTIL
GIHLILLGLGAFLLVAKAMWFGGVYDTWAPGGGDVRVITNPTLNPAVIFGYLFKSPFGGEGWIISVDNMEDVIGGHIYIG
IICIAGGIWHILTKPFGWARRAFIWSGEAYLSYSLAAVSLMSFIATCYIWFNNTVYPSEFYGPTGPEASQAQALTFIVRD
QRLGANIGQAQGPTGLGKYLMRSPTGEIIFGGETMRFWDVRAPWKEPLLGPNGLDLDKLKNDIQPWQARRAVEYMTHAPL
GSLNSVGGVATEINTVNFTSPRTWLAAHNFIFGFLFFVGHLWHAGRARAAAAGFEKGISRENEPVYRMKPIR

Sequences:

>Translated_472_residues
MSLVPDYHWRLVSVTSTTFGSAVVQDRTQGGFAWWAGNARLINLSGRLLGAHVAHAGLIVFWAGAMLLFEVAHFTPDRPM
YEQGLILMPHVATLGWGVGPGGEVIDTYPYFVIGVLHLISSAVLGLGGIYHAIRGPETLEQSFPFFGYDWKDKNKMTTIL
GIHLILLGLGAFLLVAKAMWFGGVYDTWAPGGGDVRVITNPTLNPAVIFGYLFKSPFGGEGWIISVDNMEDVIGGHIYIG
IICIAGGIWHILTKPFGWARRAFIWSGEAYLSYSLAAVSLMSFIATCYIWFNNTVYPSEFYGPTGPEASQAQALTFIVRD
QRLGANIGQAQGPTGLGKYLMRSPTGEIIFGGETMRFWDVRAPWKEPLLGPNGLDLDKLKNDIQPWQARRAVEYMTHAPL
GSLNSVGGVATEINTVNFTSPRTWLAAHNFIFGFLFFVGHLWHAGRARAAAAGFEKGISRENEPVYRMKPIR
>Mature_471_residues
SLVPDYHWRLVSVTSTTFGSAVVQDRTQGGFAWWAGNARLINLSGRLLGAHVAHAGLIVFWAGAMLLFEVAHFTPDRPMY
EQGLILMPHVATLGWGVGPGGEVIDTYPYFVIGVLHLISSAVLGLGGIYHAIRGPETLEQSFPFFGYDWKDKNKMTTILG
IHLILLGLGAFLLVAKAMWFGGVYDTWAPGGGDVRVITNPTLNPAVIFGYLFKSPFGGEGWIISVDNMEDVIGGHIYIGI
ICIAGGIWHILTKPFGWARRAFIWSGEAYLSYSLAAVSLMSFIATCYIWFNNTVYPSEFYGPTGPEASQAQALTFIVRDQ
RLGANIGQAQGPTGLGKYLMRSPTGEIIFGGETMRFWDVRAPWKEPLLGPNGLDLDKLKNDIQPWQARRAVEYMTHAPLG
SLNSVGGVATEINTVNFTSPRTWLAAHNFIFGFLFFVGHLWHAGRARAAAAGFEKGISRENEPVYRMKPIR

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 51877; Mature: 51746

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVPDYHWRLVSVTSTTFGSAVVQDRTQGGFAWWAGNARLINLSGRLLGAHVAHAGLIV
CCCCCCCCEEEEEEECCCCCHHHHHHCCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHH
FWAGAMLLFEVAHFTPDRPMYEQGLILMPHVATLGWGVGPGGEVIDTYPYFVIGVLHLIS
HHHHHHHHHHHHHCCCCCCHHHCCCEEECCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
SAVLGLGGIYHAIRGPETLEQSFPFFGYDWKDKNKMTTILGIHLILLGLGAFLLVAKAMW
HHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FGGVYDTWAPGGGDVRVITNPTLNPAVIFGYLFKSPFGGEGWIISVDNMEDVIGGHIYIG
HCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCHHHHH
IICIAGGIWHILTKPFGWARRAFIWSGEAYLSYSLAAVSLMSFIATCYIWFNNTVYPSEF
HHHHHHHHHHHHHCCCCCHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHEECCEECCHHC
YGPTGPEASQAQALTFIVRDQRLGANIGQAQGPTGLGKYLMRSPTGEIIFGGETMRFWDV
CCCCCCCCCHHHEEEEEEECHHCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCEEEEEEC
RAPWKEPLLGPNGLDLDKLKNDIQPWQARRAVEYMTHAPLGSLNSVGGVATEINTVNFTS
CCCHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCC
PRTWLAAHNFIFGFLFFVGHLWHAGRARAAAAGFEKGISRENEPVYRMKPIR
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEECCCCC
>Mature Secondary Structure 
SLVPDYHWRLVSVTSTTFGSAVVQDRTQGGFAWWAGNARLINLSGRLLGAHVAHAGLIV
CCCCCCCEEEEEEECCCCCHHHHHHCCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHH
FWAGAMLLFEVAHFTPDRPMYEQGLILMPHVATLGWGVGPGGEVIDTYPYFVIGVLHLIS
HHHHHHHHHHHHHCCCCCCHHHCCCEEECCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
SAVLGLGGIYHAIRGPETLEQSFPFFGYDWKDKNKMTTILGIHLILLGLGAFLLVAKAMW
HHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FGGVYDTWAPGGGDVRVITNPTLNPAVIFGYLFKSPFGGEGWIISVDNMEDVIGGHIYIG
HCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCHHHHH
IICIAGGIWHILTKPFGWARRAFIWSGEAYLSYSLAAVSLMSFIATCYIWFNNTVYPSEF
HHHHHHHHHHHHHCCCCCHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHEECCEECCHHC
YGPTGPEASQAQALTFIVRDQRLGANIGQAQGPTGLGKYLMRSPTGEIIFGGETMRFWDV
CCCCCCCCCHHHEEEEEEECHHCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCEEEEEEC
RAPWKEPLLGPNGLDLDKLKNDIQPWQARRAVEYMTHAPLGSLNSVGGVATEINTVNFTS
CCCHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCC
PRTWLAAHNFIFGFLFFVGHLWHAGRARAAAAGFEKGISRENEPVYRMKPIR
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3138165 [H]