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The map label for this gene is cas1

Identifier: 86608317

GI number: 86608317

Start: 867715

End: 868704

Strand: Reverse

Name: cas1

Synonym: CYB_0835

Alternate gene names: NA

Gene position: 868704-867715 (Counterclockwise)

Preceding gene: 86608318

Following gene: 86608316

Centisome position: 28.51

GC content: 51.01

Gene sequence:

>990_bases
ATGCGAACTTTATATGTCTCTCAGCAGGGGTGTAGGCTAAGCCTTAAGCAAGAGTTCGTAATGGTCTATTTGGGCGAGTC
GCTCTTGCAGGAGGTGCCTCTACCCTTGCTGGAGCAAATTTTAATCTTTGGCCGATCCCAGGTCACCACAGACGTAGTGA
GAGCGTGCCTGAGGCGGAATATTCCTATTGCCTATCTCTCCCGGCTAGGCTATTGCTATGGTCGCCTTGTTCCTATAGAG
AGGGGGTACCGCCGCTTAGCTCATTTGCAACAAGCGCTCCCTGAAGAATGGCGATTGCAAACGGCAGTCCAGATGGTGCG
AGCCAAGCTGCTCAATAGCCGGGTGCTGCTGATGAGGCAGCTCAGGCAACGCCCCACTGAAACAGGGGATCTGACCCTGC
GCAGTCTGGAACATTTGGCTGCTCAAGCTCTTGAGGCCAAGTCTCTAGATCAATTGCGGGGCATTGAAGGAGCGGCTGCG
GCTCTGTATTTCCCGGAATTGGGAAATTGCCTTCAGCAAAGGGGCTTTGTTTTGCTTAACCGCACTCGACAGCCGCCCAC
TAACCCGGTTAATGCCATGCTCAGCTTTGGCTACATGGTGCTCTGGAACCATCTATTAACCCTGATTGAGCTGCAAGATT
TGGATCCCTATCAGGGTTGCTTGCACGCTAGCAGTGAACGCCATGCTGCTCTGGTTTCGGACTTACTGGAAGAATTTCGG
GCGCCTATTGTAGATTCAATAGTCCTCTGGCTGATCAACAAGGGCATTTTGAACATCGAAGAAGACTTTGAGTATCGCGA
TGGTGGCTGTTTTCTAAGTGATAGTGGCAGGAAAAAGTACCTTACAGCTTTCATCCAAAGAATGGAGGGATCCATCCAAA
CCCCCGATGGGGATCAACCCCGCTGGGATTTGCTGACGCAGCAGGTTAAGAAATTTAAGCATTCTGTCTATAATCCTCAA
GACCTGTATCAGCCTTACCGGATTCGCTGA

Upstream 100 bases:

>100_bases
AAATTGATGTGGAGATTTTACCGGAGCGTGGCCGCTCTAAACCCGGCAATGCCATAGATCAGAGGCGAGGCGCTGAAGAT
CTGCGTCGTCATGACGAATA

Downstream 100 bases:

>100_bases
TGTTTCTTTATGTCGTTACCTACGACACCCCTTGTGATAAGCGCCGCAAGAAAATTGCCGACCTGCTAGAAGGCTACGGC
AAGCGCGTGCAATACAGCGT

Product: CRISPR-associated Cas1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MRTLYVSQQGCRLSLKQEFVMVYLGESLLQEVPLPLLEQILIFGRSQVTTDVVRACLRRNIPIAYLSRLGYCYGRLVPIE
RGYRRLAHLQQALPEEWRLQTAVQMVRAKLLNSRVLLMRQLRQRPTETGDLTLRSLEHLAAQALEAKSLDQLRGIEGAAA
ALYFPELGNCLQQRGFVLLNRTRQPPTNPVNAMLSFGYMVLWNHLLTLIELQDLDPYQGCLHASSERHAALVSDLLEEFR
APIVDSIVLWLINKGILNIEEDFEYRDGGCFLSDSGRKKYLTAFIQRMEGSIQTPDGDQPRWDLLTQQVKKFKHSVYNPQ
DLYQPYRIR

Sequences:

>Translated_329_residues
MRTLYVSQQGCRLSLKQEFVMVYLGESLLQEVPLPLLEQILIFGRSQVTTDVVRACLRRNIPIAYLSRLGYCYGRLVPIE
RGYRRLAHLQQALPEEWRLQTAVQMVRAKLLNSRVLLMRQLRQRPTETGDLTLRSLEHLAAQALEAKSLDQLRGIEGAAA
ALYFPELGNCLQQRGFVLLNRTRQPPTNPVNAMLSFGYMVLWNHLLTLIELQDLDPYQGCLHASSERHAALVSDLLEEFR
APIVDSIVLWLINKGILNIEEDFEYRDGGCFLSDSGRKKYLTAFIQRMEGSIQTPDGDQPRWDLLTQQVKKFKHSVYNPQ
DLYQPYRIR
>Mature_329_residues
MRTLYVSQQGCRLSLKQEFVMVYLGESLLQEVPLPLLEQILIFGRSQVTTDVVRACLRRNIPIAYLSRLGYCYGRLVPIE
RGYRRLAHLQQALPEEWRLQTAVQMVRAKLLNSRVLLMRQLRQRPTETGDLTLRSLEHLAAQALEAKSLDQLRGIEGAAA
ALYFPELGNCLQQRGFVLLNRTRQPPTNPVNAMLSFGYMVLWNHLLTLIELQDLDPYQGCLHASSERHAALVSDLLEEFR
APIVDSIVLWLINKGILNIEEDFEYRDGGCFLSDSGRKKYLTAFIQRMEGSIQTPDGDQPRWDLLTQQVKKFKHSVYNPQ
DLYQPYRIR

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019858 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 37931; Mature: 37931

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLYVSQQGCRLSLKQEFVMVYLGESLLQEVPLPLLEQILIFGRSQVTTDVVRACLRRN
CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
IPIAYLSRLGYCYGRLVPIERGYRRLAHLQQALPEEWRLQTAVQMVRAKLLNSRVLLMRQ
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRQRPTETGDLTLRSLEHLAAQALEAKSLDQLRGIEGAAAALYFPELGNCLQQRGFVLLN
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEE
RTRQPPTNPVNAMLSFGYMVLWNHLLTLIELQDLDPYQGCLHASSERHAALVSDLLEEFR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHH
APIVDSIVLWLINKGILNIEEDFEYRDGGCFLSDSGRKKYLTAFIQRMEGSIQTPDGDQP
HHHHHHHHHHHHHCCCCCCHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
RWDLLTQQVKKFKHSVYNPQDLYQPYRIR
HHHHHHHHHHHHHHHCCCHHHHCCCCCCC
>Mature Secondary Structure
MRTLYVSQQGCRLSLKQEFVMVYLGESLLQEVPLPLLEQILIFGRSQVTTDVVRACLRRN
CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
IPIAYLSRLGYCYGRLVPIERGYRRLAHLQQALPEEWRLQTAVQMVRAKLLNSRVLLMRQ
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRQRPTETGDLTLRSLEHLAAQALEAKSLDQLRGIEGAAAALYFPELGNCLQQRGFVLLN
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEE
RTRQPPTNPVNAMLSFGYMVLWNHLLTLIELQDLDPYQGCLHASSERHAALVSDLLEEFR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHH
APIVDSIVLWLINKGILNIEEDFEYRDGGCFLSDSGRKKYLTAFIQRMEGSIQTPDGDQP
HHHHHHHHHHHHHCCCCCCHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
RWDLLTQQVKKFKHSVYNPQDLYQPYRIR
HHHHHHHHHHHHHHHCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]