| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608291
Identifier: 86608291
GI number: 86608291
Start: 837679
End: 838269
Strand: Direct
Name: 86608291
Synonym: CYB_0809
Alternate gene names: NA
Gene position: 837679-838269 (Clockwise)
Preceding gene: 86608290
Following gene: 86608297
Centisome position: 27.49
GC content: 60.41
Gene sequence:
>591_bases ATGTTGCAGCGGTTAGATGAGGTACTGGGAAGCTTTGGCAGCCATCCCCGTTGGGCTGAACTGAAGCAAATGCAAACCCT GCGGCAGCTCTGGCCCGAACTCGTCGGAGAGGCCGTAGCCGCCCAAACCTATCCCCTCAGCGTGCGCCGACAGGTGCTGC AAGTGGCCACCTCTACCCCGGCCTGGGCGCAAAATTTAACCTTGCAACGTCAGCTCATTCTCAAGAAACTCAACAGCCGC ATCCAACCTCCCCTCAGCGATATCCGCTTCAGCCCTGGTGCCTGGCACGAGGGATCCAGCCAAGCCACCCCCCACCCTGA TGCGGAGCTGAGCAGCAAGTTTTATGGCGCTCCCCGCCTAGCAGACCAAGATGGACAACGCCCTGGATCCTGTCGCAGCC CCAATCCAAAACAGCCCACCTCCGACCCGAAAGTGGCTTTCGAGCGCTGGGCCAGAGTGGTGAAGCAACAACAAACCCAG GAGAACCTGTTCCCTTGCCCCGCCTGCCGCTGTCCTACCCCTGCCGCCGAATTGGAGCGTTGGTTTGTCTGTGGGTTCTG CCATCGACAATCCTTGCGCCCGCCCAGCTAA
Upstream 100 bases:
>100_bases CGACTCCATTCACTCTGCCCTCAAAGAAGCGGCTCAATCGCCGGAAGACCAAAATGGTGTTTCCTAAGCTATTGCCTGCC ATTGACACCCTATCGACACC
Downstream 100 bases:
>100_bases CTCAGGAAACTCGAATTACGGTTGCTTCAAATGGCAATCAAACGATTCGTCAGGTCGATCCCCAACTTCTTTCTTCCTCT GAGAGAGGTTGTGGATGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 196
Protein sequence:
>196_residues MLQRLDEVLGSFGSHPRWAELKQMQTLRQLWPELVGEAVAAQTYPLSVRRQVLQVATSTPAWAQNLTLQRQLILKKLNSR IQPPLSDIRFSPGAWHEGSSQATPHPDAELSSKFYGAPRLADQDGQRPGSCRSPNPKQPTSDPKVAFERWARVVKQQQTQ ENLFPCPACRCPTPAAELERWFVCGFCHRQSLRPPS
Sequences:
>Translated_196_residues MLQRLDEVLGSFGSHPRWAELKQMQTLRQLWPELVGEAVAAQTYPLSVRRQVLQVATSTPAWAQNLTLQRQLILKKLNSR IQPPLSDIRFSPGAWHEGSSQATPHPDAELSSKFYGAPRLADQDGQRPGSCRSPNPKQPTSDPKVAFERWARVVKQQQTQ ENLFPCPACRCPTPAAELERWFVCGFCHRQSLRPPS >Mature_196_residues MLQRLDEVLGSFGSHPRWAELKQMQTLRQLWPELVGEAVAAQTYPLSVRRQVLQVATSTPAWAQNLTLQRQLILKKLNSR IQPPLSDIRFSPGAWHEGSSQATPHPDAELSSKFYGAPRLADQDGQRPGSCRSPNPKQPTSDPKVAFERWARVVKQQQTQ ENLFPCPACRCPTPAAELERWFVCGFCHRQSLRPPS
Specific function: Unknown
COG id: COG5512
COG function: function code R; Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22133; Mature: 22133
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQRLDEVLGSFGSHPRWAELKQMQTLRQLWPELVGEAVAAQTYPLSVRRQVLQVATSTP CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC AWAQNLTLQRQLILKKLNSRIQPPLSDIRFSPGAWHEGSSQATPHPDAELSSKFYGAPRL HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC ADQDGQRPGSCRSPNPKQPTSDPKVAFERWARVVKQQQTQENLFPCPACRCPTPAAELER CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH WFVCGFCHRQSLRPPS HHHHHHHHHCCCCCCC >Mature Secondary Structure MLQRLDEVLGSFGSHPRWAELKQMQTLRQLWPELVGEAVAAQTYPLSVRRQVLQVATSTP CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC AWAQNLTLQRQLILKKLNSRIQPPLSDIRFSPGAWHEGSSQATPHPDAELSSKFYGAPRL HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC ADQDGQRPGSCRSPNPKQPTSDPKVAFERWARVVKQQQTQENLFPCPACRCPTPAAELER CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH WFVCGFCHRQSLRPPS HHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA