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The map label for this gene is dppA [C]

Identifier: 86608268

GI number: 86608268

Start: 807712

End: 809478

Strand: Direct

Name: dppA [C]

Synonym: CYB_0784

Alternate gene names: 86608268

Gene position: 807712-809478 (Clockwise)

Preceding gene: 86608267

Following gene: 86608279

Centisome position: 26.51

GC content: 59.31

Gene sequence:

>1767_bases
ATGGCAGGCCAAAACACCACCTCAACAGAGCAGCTCAAGAGAAGCCTTTTTGTTCCCCTATTCCTAGGGATCCTCCTCCT
CTGGCTTGGCGCCTGTGCTGCTCCCGCCCGCCCGCCCCATCTCATTGCCACCGTTACCTCGGATCCCAAAACCTTCAACA
CCTATCTGGCCACCGAGAGCTCCAGCCGCGACGCCATCGCCTACCTAGAGGCGGGCCTGGTCACCCTCGATGAAGATACC
CTCCTGCCCAAGCCGGAGCTGGCGGAAGGCTGGGAAGTGTCTGAGGACGGCTTGCGCTATGTCTTTACCTTGCGGGAAGG
GCTGCGCTGGTCGGATGGAGAGCCTCTGACAGCAGCAGATGTGGACTTTACCTTTAACCGCATCATCTTCAACGAGCGGA
TCCCGACTTCTGCGCGGGATGTGCAGCGAATTGGAGAAGCTGGAGCACTGCCTCAGGTGCGGGCCCTGGACGAGCGGCGG
ATTGAGTTTATTTTACCGGAGCCCTTCGCTCCCTTTCTGCTGCAGGCGGGATCCCCCATTTTGCCCAAGCACATCCTCGA
GCCCACCGTCGAGCAGGTGGACAGCCAGGGCAACCCCCTTTTCTTGCAAACCTGGGGTATCGACACGCCGGTGCAGGAGT
TGGTGGGGGCCGGCCCCTATATCTTGCAGGAATACACCCCCGGCCAGCGGCTGGTGTACCGGCCCAACCCCTATTACTGG
AAAGGGGAAGGGATCCCGCGCATTGAACGGGTAATCCTGCGCATTGTGGACTCAGAGGACACCGCGCTGCTGCAGTTTCG
CTCCGGCGAGACCGACGTGTTTTCGGTGCGGGGGAGAGATTTTCAGCTCTTGAAGCGGGAAGAAGAACGGGATCAGTTCA
CCATCTACAATCTCGGCCAGACATTGAACAACTATTTCTTTGCCTTCAACCTCAGCCGCGCCCGTAACCCCCAGACCGGG
CGGCCTTTTGTGGATCCCGTCAAAAGCCGCTGGTTTAACGATTTGAACTTCCGCCGGGCGGTGGCCCACGCCATGAACCG
GCAGTTTTACGTCGATAGCGTCCTGCAAGGGTTGGGCGAGATCCAGCACTCGGTCTTCTCCCCCGCCAGCCCTTTCTACC
TCAGCCCCGAAGAGGGCTTGCCCACCTACGACTACAACCCTGAAAAAGCGCGGCAACTGCTCCTCGATGCCGGATACACC
TATGATGCTGAGGGCCACCTGCGGGATTCCGAGGGCAACCGTGTCCGTTTCACCTTGCTCACCAACGCCGGCAACAATCA
GCGGGAGGCCACCGGCGCGTTGATCAAAGCTGATCTGGAGCGGATCGGCATCACCGTTGATTTTACCCCCATCGCCTTCA
ACACCCTGGTGCAGCGCACCGATAGCCGCGACTGGGAAACCCTGCTGCTGGGCTTTGGTGGCGGCGGCACCGAGCCCAAC
AACGGCTCCAACATCTGGCGCAGCGATGGCCGTTTGCACCTCTTCAATCTGGGAGATTTGCCCGGCAACCCGGCAGAAGG
GGTTGAGGTCAGCGATTGGGAACGGGAGATCGACCGCATCTTTATTGAAGGGGTGCGGGAACTGGAGTTTGAGAAGCGCA
AAGCCCTCTACGACCGGTTTCAAATCATCATTCAGGAACAACTGCCCCAAATCGGCACTTTTAACCCCCTGGTTCTCTCG
GCCCTGCGCAACCGCATTCAAGGGGTGGATCCCCGACCTATTCTGGGGCCCTTGTGGAATTTGGATCAGCTCTACATTCA
AGAGTAG

Upstream 100 bases:

>100_bases
AATTGCCGTGCAACCCCCTGCTGCCTCGATTGGGAGAGGGGCTGGGGGTGAGGGGCGCTGGCGGGCCCTTTCAAACTTGC
TCGGATACTCAGCCAAGGAA

Downstream 100 bases:

>100_bases
AACTTCTGATGACGTGTCTGATGATGCATCTGATGATGTGGGATAGGGAGAGGCTGTCTGAACTGTTGAGTTGTGTCCCT
ATCGCCACATTTGGCAGGTG

Product: peptide/nickel/opine uptake ABC transporter periplasmic substrate-binding protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 588; Mature: 587

Protein sequence:

>588_residues
MAGQNTTSTEQLKRSLFVPLFLGILLLWLGACAAPARPPHLIATVTSDPKTFNTYLATESSSRDAIAYLEAGLVTLDEDT
LLPKPELAEGWEVSEDGLRYVFTLREGLRWSDGEPLTAADVDFTFNRIIFNERIPTSARDVQRIGEAGALPQVRALDERR
IEFILPEPFAPFLLQAGSPILPKHILEPTVEQVDSQGNPLFLQTWGIDTPVQELVGAGPYILQEYTPGQRLVYRPNPYYW
KGEGIPRIERVILRIVDSEDTALLQFRSGETDVFSVRGRDFQLLKREEERDQFTIYNLGQTLNNYFFAFNLSRARNPQTG
RPFVDPVKSRWFNDLNFRRAVAHAMNRQFYVDSVLQGLGEIQHSVFSPASPFYLSPEEGLPTYDYNPEKARQLLLDAGYT
YDAEGHLRDSEGNRVRFTLLTNAGNNQREATGALIKADLERIGITVDFTPIAFNTLVQRTDSRDWETLLLGFGGGGTEPN
NGSNIWRSDGRLHLFNLGDLPGNPAEGVEVSDWEREIDRIFIEGVRELEFEKRKALYDRFQIIIQEQLPQIGTFNPLVLS
ALRNRIQGVDPRPILGPLWNLDQLYIQE

Sequences:

>Translated_588_residues
MAGQNTTSTEQLKRSLFVPLFLGILLLWLGACAAPARPPHLIATVTSDPKTFNTYLATESSSRDAIAYLEAGLVTLDEDT
LLPKPELAEGWEVSEDGLRYVFTLREGLRWSDGEPLTAADVDFTFNRIIFNERIPTSARDVQRIGEAGALPQVRALDERR
IEFILPEPFAPFLLQAGSPILPKHILEPTVEQVDSQGNPLFLQTWGIDTPVQELVGAGPYILQEYTPGQRLVYRPNPYYW
KGEGIPRIERVILRIVDSEDTALLQFRSGETDVFSVRGRDFQLLKREEERDQFTIYNLGQTLNNYFFAFNLSRARNPQTG
RPFVDPVKSRWFNDLNFRRAVAHAMNRQFYVDSVLQGLGEIQHSVFSPASPFYLSPEEGLPTYDYNPEKARQLLLDAGYT
YDAEGHLRDSEGNRVRFTLLTNAGNNQREATGALIKADLERIGITVDFTPIAFNTLVQRTDSRDWETLLLGFGGGGTEPN
NGSNIWRSDGRLHLFNLGDLPGNPAEGVEVSDWEREIDRIFIEGVRELEFEKRKALYDRFQIIIQEQLPQIGTFNPLVLS
ALRNRIQGVDPRPILGPLWNLDQLYIQE
>Mature_587_residues
AGQNTTSTEQLKRSLFVPLFLGILLLWLGACAAPARPPHLIATVTSDPKTFNTYLATESSSRDAIAYLEAGLVTLDEDTL
LPKPELAEGWEVSEDGLRYVFTLREGLRWSDGEPLTAADVDFTFNRIIFNERIPTSARDVQRIGEAGALPQVRALDERRI
EFILPEPFAPFLLQAGSPILPKHILEPTVEQVDSQGNPLFLQTWGIDTPVQELVGAGPYILQEYTPGQRLVYRPNPYYWK
GEGIPRIERVILRIVDSEDTALLQFRSGETDVFSVRGRDFQLLKREEERDQFTIYNLGQTLNNYFFAFNLSRARNPQTGR
PFVDPVKSRWFNDLNFRRAVAHAMNRQFYVDSVLQGLGEIQHSVFSPASPFYLSPEEGLPTYDYNPEKARQLLLDAGYTY
DAEGHLRDSEGNRVRFTLLTNAGNNQREATGALIKADLERIGITVDFTPIAFNTLVQRTDSRDWETLLLGFGGGGTEPNN
GSNIWRSDGRLHLFNLGDLPGNPAEGVEVSDWEREIDRIFIEGVRELEFEKRKALYDRFQIIIQEQLPQIGTFNPLVLSA
LRNRIQGVDPRPILGPLWNLDQLYIQE

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789966, Length=579, Percent_Identity=23.8341968911917, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1789887, Length=370, Percent_Identity=27.027027027027, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1787762, Length=598, Percent_Identity=22.9096989966555, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1789397, Length=547, Percent_Identity=23.217550274223, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787551, Length=573, Percent_Identity=24.6073298429319, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1787052, Length=542, Percent_Identity=21.5867158671587, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87081878, Length=533, Percent_Identity=22.3264540337711, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1787495, Length=492, Percent_Identity=22.7642276422764, Blast_Score=89, Evalue=8e-19,

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 66646; Mature: 66515

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGQNTTSTEQLKRSLFVPLFLGILLLWLGACAAPARPPHLIATVTSDPKTFNTYLATES
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEECC
SSRDAIAYLEAGLVTLDEDTLLPKPELAEGWEVSEDGLRYVFTLREGLRWSDGEPLTAAD
CCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCCEEEC
VDFTFNRIIFNERIPTSARDVQRIGEAGALPQVRALDERRIEFILPEPFAPFLLQAGSPI
CCCEEEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHCCEEEECCCCCHHHHHHCCCCC
LPKHILEPTVEQVDSQGNPLFLQTWGIDTPVQELVGAGPYILQEYTPGQRLVYRPNPYYW
CCHHHHCHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCEEEECCCCCEE
KGEGIPRIERVILRIVDSEDTALLQFRSGETDVFSVRGRDFQLLKREEERDQFTIYNLGQ
CCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHCCCCEEEEEHHH
TLNNYFFAFNLSRARNPQTGRPFVDPVKSRWFNDLNFRRAVAHAMNRQFYVDSVLQGLGE
HHCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
IQHSVFSPASPFYLSPEEGLPTYDYNPEKARQLLLDAGYTYDAEGHLRDSEGNRVRFTLL
HHHHHCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCEECCCCCEEEEEEE
TNAGNNQREATGALIKADLERIGITVDFTPIAFNTLVQRTDSRDWETLLLGFGGGGTEPN
ECCCCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
NGSNIWRSDGRLHLFNLGDLPGNPAEGVEVSDWEREIDRIFIEGVRELEFEKRKALYDRF
CCCCEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIIIQEQLPQIGTFNPLVLSALRNRIQGVDPRPILGPLWNLDQLYIQE
HHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEECC
>Mature Secondary Structure 
AGQNTTSTEQLKRSLFVPLFLGILLLWLGACAAPARPPHLIATVTSDPKTFNTYLATES
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEECC
SSRDAIAYLEAGLVTLDEDTLLPKPELAEGWEVSEDGLRYVFTLREGLRWSDGEPLTAAD
CCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCCEEEC
VDFTFNRIIFNERIPTSARDVQRIGEAGALPQVRALDERRIEFILPEPFAPFLLQAGSPI
CCCEEEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHCCEEEECCCCCHHHHHHCCCCC
LPKHILEPTVEQVDSQGNPLFLQTWGIDTPVQELVGAGPYILQEYTPGQRLVYRPNPYYW
CCHHHHCHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCEEEECCCCCEE
KGEGIPRIERVILRIVDSEDTALLQFRSGETDVFSVRGRDFQLLKREEERDQFTIYNLGQ
CCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHCCCCEEEEEHHH
TLNNYFFAFNLSRARNPQTGRPFVDPVKSRWFNDLNFRRAVAHAMNRQFYVDSVLQGLGE
HHCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
IQHSVFSPASPFYLSPEEGLPTYDYNPEKARQLLLDAGYTYDAEGHLRDSEGNRVRFTLL
HHHHHCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCEECCCCCEEEEEEE
TNAGNNQREATGALIKADLERIGITVDFTPIAFNTLVQRTDSRDWETLLLGFGGGGTEPN
ECCCCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
NGSNIWRSDGRLHLFNLGDLPGNPAEGVEVSDWEREIDRIFIEGVRELEFEKRKALYDRF
CCCCEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIIIQEQLPQIGTFNPLVLSALRNRIQGVDPRPILGPLWNLDQLYIQE
HHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]