| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608178
Identifier: 86608178
GI number: 86608178
Start: 709543
End: 710385
Strand: Direct
Name: 86608178
Synonym: CYB_0692
Alternate gene names: NA
Gene position: 709543-710385 (Clockwise)
Preceding gene: 86608177
Following gene: 86608183
Centisome position: 23.29
GC content: 60.14
Gene sequence:
>843_bases ATGCCTCGATTTGAGAACCTCATTGCCGCTATCGACGGCAGCGGCCCCACTGAGCAAATGGTGCATACCCTTCTGTCTCT GCCGGCCTTTGCCCAGTGCCACGTGACATTGCTGCATGCGGTGCCTTCCCAGACCTCTGCCGAGGAGATGCGGGCTGCCT GGCAAAAGGGGCAGGAACTGCTGGCCCAAACCCTGCAGACTTTCCCCCCCCGCCCAGGGCTAAAGATCAGCACGCAACTG GTGGAAGGGGATCCCAAGGTGGTGGTGCTGCAGGTGGCCGAGTCCCTGCCCAATCCGCTGATTGTGATGGGATCCCGGGG GCGCAACCGCATCATGGCCATTTTGCAGAACTCGGTGAGCCAATATGTGTTCCAGCTCGCCTCCTGCCCAATGCTGCTGG TCAAAGACGACGCCTACGTCAAATACCCCAGCCATGTCATGGTGGCCCTCAACAACTCCCCCGCTGCCCAGGCCGCCTTT GCCACGGCCCTTGACTTGATCTCCGGCATTCAAGGGGCCCAGATCTTCCTGGCCTCTGTGCAGTTGGATGCCGACAACCC AGGTAGAGATGAGGCTCTAGATCGGGCAATCGACATCCTCAAAAACCGGCAAATCGGCCACCAAGTGTTAACTGCCGTCG GGGATCCGGCTACGGAGATTGTCCGCCTGGCTGAAGAAAGCAAGGCCGATCTGCTGGTGATGGGATCCCCTGACCGCCGA CCTACCATTGCCCGCAGCATTCCCGATTTGGATCGGCTGTTGGGGCGTTCCATCTCTGACTATGTGCGGGTTCACATCGG CTGCCCCGTGCTGATGGTGCGTTCCGTCCAAGACAGCGACTGA
Upstream 100 bases:
>100_bases ACCCAACAAAATGTTGCAGGACATCCCCTACGGTAACAGGGATCCGCAGGGGCAGATCTAGGATGAGTCTTGGCAAACTA CGGCCCGGAGAACGGATCCC
Downstream 100 bases:
>100_bases GCCAGGCTTCAAGGCAGTATGGAGCGGCGCTCTGTAACTCGGTCACTCTGCTGCTGACGATCCGGGCTGACGGCCCAAGC TTCAAAGATCAGCTCAGGGA
Product: universal stress protein
Products: NA
Alternate protein names: UspA Domain Protein; UspA Domain-Containing Protein; Universal Stress Protein Family; Universal Stress Protein Family Protein
Number of amino acids: Translated: 280; Mature: 279
Protein sequence:
>280_residues MPRFENLIAAIDGSGPTEQMVHTLLSLPAFAQCHVTLLHAVPSQTSAEEMRAAWQKGQELLAQTLQTFPPRPGLKISTQL VEGDPKVVVLQVAESLPNPLIVMGSRGRNRIMAILQNSVSQYVFQLASCPMLLVKDDAYVKYPSHVMVALNNSPAAQAAF ATALDLISGIQGAQIFLASVQLDADNPGRDEALDRAIDILKNRQIGHQVLTAVGDPATEIVRLAEESKADLLVMGSPDRR PTIARSIPDLDRLLGRSISDYVRVHIGCPVLMVRSVQDSD
Sequences:
>Translated_280_residues MPRFENLIAAIDGSGPTEQMVHTLLSLPAFAQCHVTLLHAVPSQTSAEEMRAAWQKGQELLAQTLQTFPPRPGLKISTQL VEGDPKVVVLQVAESLPNPLIVMGSRGRNRIMAILQNSVSQYVFQLASCPMLLVKDDAYVKYPSHVMVALNNSPAAQAAF ATALDLISGIQGAQIFLASVQLDADNPGRDEALDRAIDILKNRQIGHQVLTAVGDPATEIVRLAEESKADLLVMGSPDRR PTIARSIPDLDRLLGRSISDYVRVHIGCPVLMVRSVQDSD >Mature_279_residues PRFENLIAAIDGSGPTEQMVHTLLSLPAFAQCHVTLLHAVPSQTSAEEMRAAWQKGQELLAQTLQTFPPRPGLKISTQLV EGDPKVVVLQVAESLPNPLIVMGSRGRNRIMAILQNSVSQYVFQLASCPMLLVKDDAYVKYPSHVMVALNNSPAAQAAFA TALDLISGIQGAQIFLASVQLDADNPGRDEALDRAIDILKNRQIGHQVLTAVGDPATEIVRLAEESKADLLVMGSPDRRP TIARSIPDLDRLLGRSISDYVRVHIGCPVLMVRSVQDSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30355; Mature: 30224
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRFENLIAAIDGSGPTEQMVHTLLSLPAFAQCHVTLLHAVPSQTSAEEMRAAWQKGQEL CCCHHHHHEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH LAQTLQTFPPRPGLKISTQLVEGDPKVVVLQVAESLPNPLIVMGSRGRNRIMAILQNSVS HHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEHHHCCCCEEEECCCCCHHHHHHHHHHHH QYVFQLASCPMLLVKDDAYVKYPSHVMVALNNSPAAQAAFATALDLISGIQGAQIFLASV HHHHHHHCCCEEEEECCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEE QLDADNPGRDEALDRAIDILKNRQIGHQVLTAVGDPATEIVRLAEESKADLLVMGSPDRR EECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCC PTIARSIPDLDRLLGRSISDYVRVHIGCPVLMVRSVQDSD CHHHHCCCHHHHHHCCCHHHHHEEHCCCCEEEEECCCCCC >Mature Secondary Structure PRFENLIAAIDGSGPTEQMVHTLLSLPAFAQCHVTLLHAVPSQTSAEEMRAAWQKGQEL CCHHHHHEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH LAQTLQTFPPRPGLKISTQLVEGDPKVVVLQVAESLPNPLIVMGSRGRNRIMAILQNSVS HHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEHHHCCCCEEEECCCCCHHHHHHHHHHHH QYVFQLASCPMLLVKDDAYVKYPSHVMVALNNSPAAQAAFATALDLISGIQGAQIFLASV HHHHHHHCCCEEEEECCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEE QLDADNPGRDEALDRAIDILKNRQIGHQVLTAVGDPATEIVRLAEESKADLLVMGSPDRR EECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCC PTIARSIPDLDRLLGRSISDYVRVHIGCPVLMVRSVQDSD CHHHHCCCHHHHHHCCCHHHHHEEHCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA