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The map label for this gene is opuCB [H]

Identifier: 86608073

GI number: 86608073

Start: 588095

End: 588712

Strand: Direct

Name: opuCB [H]

Synonym: CYB_0581

Alternate gene names: 86608073

Gene position: 588095-588712 (Clockwise)

Preceding gene: 86608072

Following gene: 86608074

Centisome position: 19.3

GC content: 63.43

Gene sequence:

>618_bases
GTGAGCTATCTCCTCAACCACCCCGGCCTGATGTGGCAGCTCACCCAAGAGCATCTGGCGATGGTGGGGATGACCTTGGG
CATGGCGGTGGTGCTGGCGGTGCCGCTGGCTCTGCTGGTTCACCACGTGCGCTGGTTGGCCCTGTCGGTCATGGGGATCC
TCAGCATCCTGTACACAGTGCCCAGCCTGGCTTTGATCATTTTGTTGGTGCCCTGGCTTGGCCTCAATGCCCGCTCGGTG
GTGGTGGCGATGGTGATCTACACGCAGGTGATCTTGGTGCGCCATTTTTGCGTGGGCCTGCGCTCGGTCGAGCCTGCCAT
CCTGGAAGCTGCCAAGGGCATGGGGATGAACCTCTGGCAACGGTGGTGGCAGGTGCAGGTGCCGCTCATGCTGCCCATTG
TTTTGGCAGGGCTGCGGCTGGCGGCAATTGTGGCCATTGCCATTGCCACCGTGGGCGCCAAGTTTGGGGCAGGGGGACTG
GGAACCCTGCTGTTCGATGGCATTGCCCAGGCCGGTCGCTACGACAAGATCTGGGCCGGATCCCTGGCGGTGGGATCCCT
GGCCTTGCTGGTGAACACAGCCTTGCTCAGCCTGGAATGGGCGGCCCGTCGTGGCTGA

Upstream 100 bases:

>100_bases
CAGGGGCGGCAGCCCTGACGGTGTGGGAGGACGGGCGGGCCATCGGCGTTTTGACCTTGGATCACATTCGCAGCTTGGCC
ATGCTGGAGGGGGGATCCGC

Downstream 100 bases:

>100_bases
GGGGGTAGACTTAAGGACTCCGTCCCGCTGGCGCGATCGGGCAGGTTTATCCTCTAGTTGTGTGGGGCGAAACTGGGTGT
AGCATGGGTGAGCAACCAGG

Product: quaternary amine ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSYLLNHPGLMWQLTQEHLAMVGMTLGMAVVLAVPLALLVHHVRWLALSVMGILSILYTVPSLALIILLVPWLGLNARSV
VVAMVIYTQVILVRHFCVGLRSVEPAILEAAKGMGMNLWQRWWQVQVPLMLPIVLAGLRLAAIVAIAIATVGAKFGAGGL
GTLLFDGIAQAGRYDKIWAGSLAVGSLALLVNTALLSLEWAARRG

Sequences:

>Translated_205_residues
MSYLLNHPGLMWQLTQEHLAMVGMTLGMAVVLAVPLALLVHHVRWLALSVMGILSILYTVPSLALIILLVPWLGLNARSV
VVAMVIYTQVILVRHFCVGLRSVEPAILEAAKGMGMNLWQRWWQVQVPLMLPIVLAGLRLAAIVAIAIATVGAKFGAGGL
GTLLFDGIAQAGRYDKIWAGSLAVGSLALLVNTALLSLEWAARRG
>Mature_204_residues
SYLLNHPGLMWQLTQEHLAMVGMTLGMAVVLAVPLALLVHHVRWLALSVMGILSILYTVPSLALIILLVPWLGLNARSVV
VAMVIYTQVILVRHFCVGLRSVEPAILEAAKGMGMNLWQRWWQVQVPLMLPIVLAGLRLAAIVAIAIATVGAKFGAGGLG
TLLFDGIAQAGRYDKIWAGSLAVGSLALLVNTALLSLEWAARRG

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=208, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1788449, Length=111, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22031; Mature: 21900

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYLLNHPGLMWQLTQEHLAMVGMTLGMAVVLAVPLALLVHHVRWLALSVMGILSILYTV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSLALIILLVPWLGLNARSVVVAMVIYTQVILVRHFCVGLRSVEPAILEAAKGMGMNLWQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHH
RWWQVQVPLMLPIVLAGLRLAAIVAIAIATVGAKFGAGGLGTLLFDGIAQAGRYDKIWAG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCC
SLAVGSLALLVNTALLSLEWAARRG
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SYLLNHPGLMWQLTQEHLAMVGMTLGMAVVLAVPLALLVHHVRWLALSVMGILSILYTV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSLALIILLVPWLGLNARSVVVAMVIYTQVILVRHFCVGLRSVEPAILEAAKGMGMNLWQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHH
RWWQVQVPLMLPIVLAGLRLAAIVAIAIATVGAKFGAGGLGTLLFDGIAQAGRYDKIWAG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCC
SLAVGSLALLVNTALLSLEWAARRG
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]