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The map label for this gene is ydcM [C]

Identifier: 86608040

GI number: 86608040

Start: 559713

End: 560867

Strand: Direct

Name: ydcM [C]

Synonym: CYB_0548

Alternate gene names: 86608040

Gene position: 559713-560867 (Clockwise)

Preceding gene: 86608039

Following gene: 86608042

Centisome position: 18.37

GC content: 56.02

Gene sequence:

>1155_bases
ATGAGCCAGACTATATCCGTACGTTGCAAGCTGATAGTCCCACAAGAGTTGCGTCAAGAAATTGACCGCACCTTGCAGAG
ATTTGCTGACGCTTGTAACCAGATCTTGGATACCGCCAAGCGCGAGAAGTGCTGGAACACCGCCAAGCTGCACCACTTGG
TCTATCGACCGGTAAGAGCAGCAACGGGGCTGAAAGCCAACCACGTCTGTCAGGCGCTCCGTCGGGTGATTAGCAACGCC
AAGGCGGTGAAGCAAGTCCACAGGTTCCGCCCCACCAGTCTGACTTTGGACGCTCGTACTTTTAAGTACCGAGAGTCCGA
CCAAACCGTGGGCGTGACCCTGATGAGCGGACGGGTTTGGCTCAAGCTCAAGATTGGCGGCTATCAAATCGCTTTGCTGC
GGGGGCAGAAGCCGACAAGCGCAACCCTGTCCAAGACCAAGCAAGGGGACTACTACATCAACATCGCTGTTGAGCTGGAT
ACTCCCCCGACTGGCAAAACTCCAAAGGTAATCGGAGTTGACTTGGGCAGGCGGGATATCGCCACCGCTAGCAACGGACG
CTCTTGGAGTGGAGAGCACATCCAGGCCGTCCGTGACCGGTTCAGCCGTGTACGCGCCAAGGTTCAATCCAAACGCACTC
GCAGCTCTAGGAGACTGCTGAGAAGGCTCTCTGGGAGAGAACGGCGCTACCAGACATGGCTGAACCATAACATCAGCAAA
ACCTTGGTCAGGGATGCCCAGGCTATTGGTGCGGCACTGGCTTTTGAAGACTTGACAGGCATCAGAGATTGCCTGAATCA
GAAGTCTCGAAGTAAGGCTGAGCGGCGCAGGACTAACAACTGGGCGTTCTACCAGCTCAGGATGTTTGTAGCCTACAAGG
CTGCCATTGCCGGAGTGCCTGTGGTGCTGGTGCCGCCTGCCTACACCAGTCAGACCTGCCACAAATGCCTGCACATCCAC
CCTGAGCGGGGTAAGTCCTACCGCAATGGCAAGTCGTTCAAGTGTGGACACTGCGGGTGGGAAGGGGATGCTGACCATAA
CGCTGCTCAAGTAATCTCTCTCCTTGGGGCGACTGTAAACTCGCCTGAAATTCCGAAACTTAGCTGTCCTCTGGGGCCGC
TAGGGATTGGGATAAAGCTCGCACCCTGCACATAG

Upstream 100 bases:

>100_bases
GGCTGGAGGCCCGCACCATAGCCGCAGGCTTGGTGTCGGGAGGAAAGCCCGCCTCCATATAGGTTTGCTGGTCAAAGCCT
GGATGAGCTACAATAAGCCC

Downstream 100 bases:

>100_bases
CGCGGGTGTCGGGTAGTTTACCAAACAGCTTAAGACCTGCCATACGCCACAGCCTCTCCCCGGAAGAGGGAAAGGCTGGA
ACTGGGTTGGGAAGTAAACT

Product: ISSoc8, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MSQTISVRCKLIVPQELRQEIDRTLQRFADACNQILDTAKREKCWNTAKLHHLVYRPVRAATGLKANHVCQALRRVISNA
KAVKQVHRFRPTSLTLDARTFKYRESDQTVGVTLMSGRVWLKLKIGGYQIALLRGQKPTSATLSKTKQGDYYINIAVELD
TPPTGKTPKVIGVDLGRRDIATASNGRSWSGEHIQAVRDRFSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISK
TLVRDAQAIGAALAFEDLTGIRDCLNQKSRSKAERRRTNNWAFYQLRMFVAYKAAIAGVPVVLVPPAYTSQTCHKCLHIH
PERGKSYRNGKSFKCGHCGWEGDADHNAAQVISLLGATVNSPEIPKLSCPLGPLGIGIKLAPCT

Sequences:

>Translated_384_residues
MSQTISVRCKLIVPQELRQEIDRTLQRFADACNQILDTAKREKCWNTAKLHHLVYRPVRAATGLKANHVCQALRRVISNA
KAVKQVHRFRPTSLTLDARTFKYRESDQTVGVTLMSGRVWLKLKIGGYQIALLRGQKPTSATLSKTKQGDYYINIAVELD
TPPTGKTPKVIGVDLGRRDIATASNGRSWSGEHIQAVRDRFSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISK
TLVRDAQAIGAALAFEDLTGIRDCLNQKSRSKAERRRTNNWAFYQLRMFVAYKAAIAGVPVVLVPPAYTSQTCHKCLHIH
PERGKSYRNGKSFKCGHCGWEGDADHNAAQVISLLGATVNSPEIPKLSCPLGPLGIGIKLAPCT
>Mature_383_residues
SQTISVRCKLIVPQELRQEIDRTLQRFADACNQILDTAKREKCWNTAKLHHLVYRPVRAATGLKANHVCQALRRVISNAK
AVKQVHRFRPTSLTLDARTFKYRESDQTVGVTLMSGRVWLKLKIGGYQIALLRGQKPTSATLSKTKQGDYYINIAVELDT
PPTGKTPKVIGVDLGRRDIATASNGRSWSGEHIQAVRDRFSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISKT
LVRDAQAIGAALAFEDLTGIRDCLNQKSRSKAERRRTNNWAFYQLRMFVAYKAAIAGVPVVLVPPAYTSQTCHKCLHIHP
ERGKSYRNGKSFKCGHCGWEGDADHNAAQVISLLGATVNSPEIPKLSCPLGPLGIGIKLAPCT

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43086; Mature: 42955

Theoretical pI: Translated: 11.07; Mature: 11.07

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTISVRCKLIVPQELRQEIDRTLQRFADACNQILDTAKREKCWNTAKLHHLVYRPVRA
CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ATGLKANHVCQALRRVISNAKAVKQVHRFRPTSLTLDARTFKYRESDQTVGVTLMSGRVW
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHEEECCCCCEEEEEEEECEEE
LKLKIGGYQIALLRGQKPTSATLSKTKQGDYYINIAVELDTPPTGKTPKVIGVDLGRRDI
EEEEECCEEEEEEECCCCCHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCHHC
ATASNGRSWSGEHIQAVRDRFSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHH
TLVRDAQAIGAALAFEDLTGIRDCLNQKSRSKAERRRTNNWAFYQLRMFVAYKAAIAGVP
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCC
VVLVPPAYTSQTCHKCLHIHPERGKSYRNGKSFKCGHCGWEGDADHNAAQVISLLGATVN
EEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCC
SPEIPKLSCPLGPLGIGIKLAPCT
CCCCCCCCCCCCCCCCCEEECCCC
>Mature Secondary Structure 
SQTISVRCKLIVPQELRQEIDRTLQRFADACNQILDTAKREKCWNTAKLHHLVYRPVRA
CCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ATGLKANHVCQALRRVISNAKAVKQVHRFRPTSLTLDARTFKYRESDQTVGVTLMSGRVW
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHEEECCCCCEEEEEEEECEEE
LKLKIGGYQIALLRGQKPTSATLSKTKQGDYYINIAVELDTPPTGKTPKVIGVDLGRRDI
EEEEECCEEEEEEECCCCCHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCHHC
ATASNGRSWSGEHIQAVRDRFSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHH
TLVRDAQAIGAALAFEDLTGIRDCLNQKSRSKAERRRTNNWAFYQLRMFVAYKAAIAGVP
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCC
VVLVPPAYTSQTCHKCLHIHPERGKSYRNGKSFKCGHCGWEGDADHNAAQVISLLGATVN
EEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCC
SPEIPKLSCPLGPLGIGIKLAPCT
CCCCCCCCCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]