| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607717
Identifier: 86607717
GI number: 86607717
Start: 229471
End: 231006
Strand: Reverse
Name: 86607717
Synonym: CYB_0218
Alternate gene names: NA
Gene position: 231006-229471 (Counterclockwise)
Preceding gene: 86607718
Following gene: 86607716
Centisome position: 7.58
GC content: 60.87
Gene sequence:
>1536_bases ATGGCAGATTGGATCCTGTTGGCGCTGGTGGGTTCTGCAACCTACCTGCTGCTGCAAAAAAGTGTGGCCCGCCTCTCAAA GGTGCCGTGGCGGATCCTGTGGCTGGTGATGATGCTGCCCCCTTTGGTTTGGGTGCTGGGGCGTCAGGTGTTTCAGTACG AATTGCCTCCCTTGCTGATGTTGCTGCTGTTTCTCACCTCCTACTTTACCAGCATGACCTTGGTGAGACGAGGGGGTATT CGACCCTCAACCGGAGGCCCTCGGCCAGAGGTGGAAAACTCCTCTCCAGAAGCGGATCCCTCGCCGGCTGGGGAACCTGA GCCAGAGGAAGAGGAGGAAGACGGCGCCGCAGATCCGGTCTCGCTGGCTCTTGCCCACACCCCCATCTCCGAAGTGCCGC GGGAGAAGCTGAGCCATTGCTTCCCCTGGAACGTCTTTTATTTGCAAAATGTGGAGTACCGCCCCCAGGCGATCATCTGC CGGGGCAACTTGCGGGCGGATCCCAGTGAAGCCTATGAGCGGGTGCAGCAAAACGTGGAAACCACTTTCGGCAAACGCTT TTTGGTGGTGCTGCAGGAGGGGTTTGCCGGTAAGCCCTTTTTTGCCTTGGTGCCCAACCCGGCGGCGCGGCGCTCCCCGG CGGACAGTCGAGAGTTGCCGCTGCTGGCTTTGGGGCTGTTGCTATTCACCTTCTGGACAACCCTCAGTGCTGGGGCCCAC GCGGCTGGGGTTAGCCCTGACCGGCTGCTGCATTTGCCCTCTCTGATGAAAGGATTGCCCTATGCGGTCGGGATCCTTGC CATTTTGGGATCCCATGAGTGGACTCGTTACTGGGTGGCCCGCCGCCACCACATCAAAACCTCGCTGCCCTATTTCATCC CGGTGCCTTTTGTCCTAGGGACTTTTGGGGCGTTTATCCAGTTGAAAGAGCCGGTGCCCAACCGCAAGGTGTTGTTTGAT ATCGCCGCCGCTGGGCCGCTGGCAGGGAGTCTTGTTGCTTTGGGCATGCTGTTGCTGGGGCTGTTGTTTTCAGCGCCTGC AGATCCTCCCGCGGTGCCGGAGGGGCAGCCGACCCCGATTAGTTTTCATCGCATTGACCCGCGCCTATCGGTGCTGCTGG CAATTCTGGCCCGCATGGTGCTGGGGGATCAGTTGCAGCCGGGGCAGGTGATCGAGCTGCACCCGCTGGCCTTTGCCGGC TGGCTGGGCTTGGTGGTGATTGCCTTTAACCTCATGCCGGTGGGCCAACTGGATGGAGGGCACATTGTCCACGCAGTGTA TGGACAGCAGATGGGAGCGAATGTAGGCCGGGTAGCCCGCTGGTTGGTGCTGCTGCTGGCCTTGACGGTGCAGCCTTGGC TGTTGCTCTGGGCGCTGCTGCTGTTTGTGATTTCCAGTGCCGACGAGCCGGCCCTCAACGATGTGACGGAACTGGACGAG GCCCGAGATCTGCTGGGGCTGGGGATGCTCACGCTGCTGGTGCTGATCCTGCTGCCGGTGCCGCCGTTTTTGCAAAATGG GCTGGGCTTGGCCTAG
Upstream 100 bases:
>100_bases GCCTCAATTGGCTCTTCAGGGATCCCGGCTGCAAGCTGTAGCGAGGGGATTGGATTTGCCGCTAGCTTGGTAGAGGTGTT CTCCTCCGTTTTTTGAACTC
Downstream 100 bases:
>100_bases ATCCGGGGTAGGATCCAAACCGCCCCTGACCTCGTTCTTCTCTCATGGAACGCAGCTTAATCGTTCAAAAGTACGGCGGT ACCTCTGTCGGCTCTGTCGA
Product: M50B family peptidase
Products: NA
Alternate protein names: Peptidase; Membrane-Associated Zn-Dependent Protease; M50 Family Peptidase; Metalloprotease; Zinc Metalloprotease; Zinc Protease; Membrane-Associated Metallopeptidase; M50B Family Peptidase; Membrane Associated Metalloprotease; M50 Family Metallopeptidase; S2P Family Metalloprotease; Integral Membrane Protease
Number of amino acids: Translated: 511; Mature: 510
Protein sequence:
>511_residues MADWILLALVGSATYLLLQKSVARLSKVPWRILWLVMMLPPLVWVLGRQVFQYELPPLLMLLLFLTSYFTSMTLVRRGGI RPSTGGPRPEVENSSPEADPSPAGEPEPEEEEEDGAADPVSLALAHTPISEVPREKLSHCFPWNVFYLQNVEYRPQAIIC RGNLRADPSEAYERVQQNVETTFGKRFLVVLQEGFAGKPFFALVPNPAARRSPADSRELPLLALGLLLFTFWTTLSAGAH AAGVSPDRLLHLPSLMKGLPYAVGILAILGSHEWTRYWVARRHHIKTSLPYFIPVPFVLGTFGAFIQLKEPVPNRKVLFD IAAAGPLAGSLVALGMLLLGLLFSAPADPPAVPEGQPTPISFHRIDPRLSVLLAILARMVLGDQLQPGQVIELHPLAFAG WLGLVVIAFNLMPVGQLDGGHIVHAVYGQQMGANVGRVARWLVLLLALTVQPWLLLWALLLFVISSADEPALNDVTELDE ARDLLGLGMLTLLVLILLPVPPFLQNGLGLA
Sequences:
>Translated_511_residues MADWILLALVGSATYLLLQKSVARLSKVPWRILWLVMMLPPLVWVLGRQVFQYELPPLLMLLLFLTSYFTSMTLVRRGGI RPSTGGPRPEVENSSPEADPSPAGEPEPEEEEEDGAADPVSLALAHTPISEVPREKLSHCFPWNVFYLQNVEYRPQAIIC RGNLRADPSEAYERVQQNVETTFGKRFLVVLQEGFAGKPFFALVPNPAARRSPADSRELPLLALGLLLFTFWTTLSAGAH AAGVSPDRLLHLPSLMKGLPYAVGILAILGSHEWTRYWVARRHHIKTSLPYFIPVPFVLGTFGAFIQLKEPVPNRKVLFD IAAAGPLAGSLVALGMLLLGLLFSAPADPPAVPEGQPTPISFHRIDPRLSVLLAILARMVLGDQLQPGQVIELHPLAFAG WLGLVVIAFNLMPVGQLDGGHIVHAVYGQQMGANVGRVARWLVLLLALTVQPWLLLWALLLFVISSADEPALNDVTELDE ARDLLGLGMLTLLVLILLPVPPFLQNGLGLA >Mature_510_residues ADWILLALVGSATYLLLQKSVARLSKVPWRILWLVMMLPPLVWVLGRQVFQYELPPLLMLLLFLTSYFTSMTLVRRGGIR PSTGGPRPEVENSSPEADPSPAGEPEPEEEEEDGAADPVSLALAHTPISEVPREKLSHCFPWNVFYLQNVEYRPQAIICR GNLRADPSEAYERVQQNVETTFGKRFLVVLQEGFAGKPFFALVPNPAARRSPADSRELPLLALGLLLFTFWTTLSAGAHA AGVSPDRLLHLPSLMKGLPYAVGILAILGSHEWTRYWVARRHHIKTSLPYFIPVPFVLGTFGAFIQLKEPVPNRKVLFDI AAAGPLAGSLVALGMLLLGLLFSAPADPPAVPEGQPTPISFHRIDPRLSVLLAILARMVLGDQLQPGQVIELHPLAFAGW LGLVVIAFNLMPVGQLDGGHIVHAVYGQQMGANVGRVARWLVLLLALTVQPWLLLWALLLFVISSADEPALNDVTELDEA RDLLGLGMLTLLVLILLPVPPFLQNGLGLA
Specific function: Unknown
COG id: COG0750
COG function: function code M; Predicted membrane-associated Zn-dependent proteases 1
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55949; Mature: 55817
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADWILLALVGSATYLLLQKSVARLSKVPWRILWLVMMLPPLVWVLGRQVFQYELPPLLM CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH LLLFLTSYFTSMTLVRRGGIRPSTGGPRPEVENSSPEADPSPAGEPEPEEEEEDGAADPV HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH SLALAHTPISEVPREKLSHCFPWNVFYLQNVEYRPQAIICRGNLRADPSEAYERVQQNVE HHHEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHH TTFGKRFLVVLQEGFAGKPFFALVPNPAARRSPADSRELPLLALGLLLFTFWTTLSAGAH HHHHHHEEEHHHCCCCCCCEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC AAGVSPDRLLHLPSLMKGLPYAVGILAILGSHEWTRYWVARRHHIKTSLPYFIPVPFVLG CCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH TFGAFIQLKEPVPNRKVLFDIAAAGPLAGSLVALGMLLLGLLFSAPADPPAVPEGQPTPI HHHHHEEECCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE SFHRIDPRLSVLLAILARMVLGDQLQPGQVIELHPLAFAGWLGLVVIAFNLMPVGQLDGG EHEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCC HIVHAVYGQQMGANVGRVARWLVLLLALTVQPWLLLWALLLFVISSADEPALNDVTELDE CEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ARDLLGLGMLTLLVLILLPVPPFLQNGLGLA HHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC >Mature Secondary Structure ADWILLALVGSATYLLLQKSVARLSKVPWRILWLVMMLPPLVWVLGRQVFQYELPPLLM CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH LLLFLTSYFTSMTLVRRGGIRPSTGGPRPEVENSSPEADPSPAGEPEPEEEEEDGAADPV HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH SLALAHTPISEVPREKLSHCFPWNVFYLQNVEYRPQAIICRGNLRADPSEAYERVQQNVE HHHEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHH TTFGKRFLVVLQEGFAGKPFFALVPNPAARRSPADSRELPLLALGLLLFTFWTTLSAGAH HHHHHHEEEHHHCCCCCCCEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC AAGVSPDRLLHLPSLMKGLPYAVGILAILGSHEWTRYWVARRHHIKTSLPYFIPVPFVLG CCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH TFGAFIQLKEPVPNRKVLFDIAAAGPLAGSLVALGMLLLGLLFSAPADPPAVPEGQPTPI HHHHHEEECCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE SFHRIDPRLSVLLAILARMVLGDQLQPGQVIELHPLAFAGWLGLVVIAFNLMPVGQLDGG EHEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCC HIVHAVYGQQMGANVGRVARWLVLLLALTVQPWLLLWALLLFVISSADEPALNDVTELDE CEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ARDLLGLGMLTLLVLILLPVPPFLQNGLGLA HHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA