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The map label for this gene is casR

Identifier: 86360900

GI number: 86360900

Start: 178626

End: 179273

Strand: Reverse

Name: casR

Synonym: RHE_PF00169

Alternate gene names: 86360900

Gene position: 179273-178626 (Counterclockwise)

Preceding gene: 86360905

Following gene: 86360899

Centisome position: 27.9

GC content: 62.19

Gene sequence:

>648_bases
ATGGATATTGCCGACGAGACTGCAGATGAGCCGCGCAAAAGAGGCCGGCCGAAAGTCTCCAGCGACGAAGACAAGCGCAC
TCATATCGTCGAAGTCGCCCGCCGCGTTTTCGTAAAATACGGCTATGCCGGAAGCACGACCGCGGTCGTCGCCTCGGAGG
CGGGTGTTTCCAAGCAGACGCTCTACAAGCTGTTTCAGAGCAAGGAGGAGCTGTTTGCCGCCGTCGTCGGCGCGCATCGG
CGGCTGATGCTCGACTTGCCGCGACCTGCGGAAGATATTCCGATCGCGGAAAGTCTAGAGCGTATCTTCATGCTCGACAT
GGATGAGGACACGGATGCGGAACGCGCCGGCTTCCTGCAGCTTGTCTTTCGCGAAGCCGCGCAGTTTCCTGAGCTTATCG
ACATTCTCCAGCGCGAAGGCATACTCGCCAGCCGGCAGCATCTCGCCGACTGGCTGAGTGATCGCCGGGCGGAAGGCAGG
CTGTCGCTGGATGACCCCGATAGCGGCGCCCGCATGCTGATGGATATGATCTTTGGTGGCATGGGCCCACCGGAAGGCCG
CGTGCAAGCCTGGCCCGACCGGGCCCTGATGCTTGCCCATCTTCACCGCTGCATCGCGATCTTCGCCGCCGGCGTCAGGG
CCGCTTGA

Upstream 100 bases:

>100_bases
CGAAATTGCTAATGCCACAACCGAAAAAATCACCCCTCAGAAATAATAGGCTGCTTTTCAGGGTCATCGGCATGCGTTTC
GGCAAAGCGGTCTGATCGTC

Downstream 100 bases:

>100_bases
ACTGATTGTGGAGACCCCTCCATTTCAAGCTTCCAATTCCCGATTGGATAATTTATAGAACTGTAGAGTTCCGTTAAGTC
GATTCGGCCACATGTAAGTG

Product: transcription regulator TetR

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; Calsymin Transcriptional Regulator; Calsymin Transcriptional Regulator Protein TetR Family; Transcription Regulator Protein; Transcription Regulator TetR; Mannitol Dehydrogenase Domain-Containing Protein; Transcriptional Regulator Protein; Multidrug Efflux Transcriptional Regulator TetR Family; Transcriptional Regulator TetR

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MDIADETADEPRKRGRPKVSSDEDKRTHIVEVARRVFVKYGYAGSTTAVVASEAGVSKQTLYKLFQSKEELFAAVVGAHR
RLMLDLPRPAEDIPIAESLERIFMLDMDEDTDAERAGFLQLVFREAAQFPELIDILQREGILASRQHLADWLSDRRAEGR
LSLDDPDSGARMLMDMIFGGMGPPEGRVQAWPDRALMLAHLHRCIAIFAAGVRAA

Sequences:

>Translated_215_residues
MDIADETADEPRKRGRPKVSSDEDKRTHIVEVARRVFVKYGYAGSTTAVVASEAGVSKQTLYKLFQSKEELFAAVVGAHR
RLMLDLPRPAEDIPIAESLERIFMLDMDEDTDAERAGFLQLVFREAAQFPELIDILQREGILASRQHLADWLSDRRAEGR
LSLDDPDSGARMLMDMIFGGMGPPEGRVQAWPDRALMLAHLHRCIAIFAAGVRAA
>Mature_215_residues
MDIADETADEPRKRGRPKVSSDEDKRTHIVEVARRVFVKYGYAGSTTAVVASEAGVSKQTLYKLFQSKEELFAAVVGAHR
RLMLDLPRPAEDIPIAESLERIFMLDMDEDTDAERAGFLQLVFREAAQFPELIDILQREGILASRQHLADWLSDRRAEGR
LSLDDPDSGARMLMDMIFGGMGPPEGRVQAWPDRALMLAHLHRCIAIFAAGVRAA

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24021; Mature: 24021

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIADETADEPRKRGRPKVSSDEDKRTHIVEVARRVFVKYGYAGSTTAVVASEAGVSKQT
CCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCCCCHHH
LYKLFQSKEELFAAVVGAHRRLMLDLPRPAEDIPIAESLERIFMLDMDEDTDAERAGFLQ
HHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH
LVFREAAQFPELIDILQREGILASRQHLADWLSDRRAEGRLSLDDPDSGARMLMDMIFGG
HHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
MGPPEGRVQAWPDRALMLAHLHRCIAIFAAGVRAA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDIADETADEPRKRGRPKVSSDEDKRTHIVEVARRVFVKYGYAGSTTAVVASEAGVSKQT
CCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCCCCHHH
LYKLFQSKEELFAAVVGAHRRLMLDLPRPAEDIPIAESLERIFMLDMDEDTDAERAGFLQ
HHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH
LVFREAAQFPELIDILQREGILASRQHLADWLSDRRAEGRLSLDDPDSGARMLMDMIFGG
HHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
MGPPEGRVQAWPDRALMLAHLHRCIAIFAAGVRAA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA