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The map label for this gene is ydfH [C]

Identifier: 86360894

GI number: 86360894

Start: 171608

End: 172357

Strand: Reverse

Name: ydfH [C]

Synonym: RHE_PF00163

Alternate gene names: 86360894

Gene position: 172357-171608 (Counterclockwise)

Preceding gene: 86360895

Following gene: 86360893

Centisome position: 26.83

GC content: 59.33

Gene sequence:

>750_bases
ATGCAAGATAGCCACACATCCGAGACCACGCAGAAATCCATTGAGGCAGCGATCGTCTCCGGGATCCTTTCTGCCAAGAT
CCGGCCGGGCACCCGTCTTGGCGAAAATCAGCTGGCAGTGCTTTTCGGCGTGTCCCGAACCCGTGTCCGTGAAGCCATGA
TGCGTCTGGAGACACGCGGCATCGTGCATGTCAGCCCCCGGCGCGGCTGGTTCGTCGTCGAGCCCTCCGCTGAGGATGCG
ATCGCCGTTTATGAGGCGAGGCGTGTCGTCGAGGCCGGATTGCTGCGCAGTATGGGCGTACTGACGGAGGAGGGGCGCAA
AGCTCTCGACATCCATCTGAATGAGGAGAGGAATGCAATGGCGGCGGGCGACCGCCAGCGCTTGACCTATTTGATGGGCG
ATTTCCATATCCGTATCGCGGAATTGAGCGGGAACACGATCATCGTCGACATCCTGCGCGACCTGACCGCGAGGACGATT
CTCATTTCGATGCTCTACCAATCCGAATTTCATGCGGCGCAGTCCCACGAGGGGCACTGCCGTATTTTTGAGGCCATGCA
GTCAGGGGATTTCGTCAGAGCCGCAGAGCTCTCCGTCGAACATCTTGATGAAGTGGAAATGGGCCTCGACCTCACGGCGC
GCCCGGATCCGCTTTCGGATCTGCGCAATTCCCTGTCGCTTCCGCTAAAGGCCGCGTCCGCCATCTCCCGGCAATCAGAC
CCCAGAACCACAACTTCAAAGGAGCAATAA

Upstream 100 bases:

>100_bases
CAGTCTGCACCTCCGGCAGGCAGATTATGCGCCAAAAATTCGTGACGGTTGGAAAACCTGGAGCGCGGGGTTTTGGCACG
CGCTTTGCTTCCCGTCTTGT

Downstream 100 bases:

>100_bases
ACACATGCTGACAAGACGGATCTTCTTCGCAATCGCGACCCTGGCCGCGACCTTCGGCTTCAACGCGCCGTCTCACGCCG
ATGCTCTCGCCGATATTACG

Product: transcriptional regulator protein

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Protein; GntR Family Regulatory Protein; GntR Domain-Containing Protein; Transcriptional Regulator Gntr Family; FCD Domain Protein; GntR Family Transcription Regulator Protein; Transcriptional Regulator GntR; GntR Family Regulatory; Bacterial Regulatory Protein; GntR Family Transcription Regulator; Transcription Regulator Protein; GntR Domain Protein; Regulatory Protein GntR HTHGntR; Transcriptional Regulator GntR Family Protein; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family; Transcription Regulator AsnC; Glycosyltransferase

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MQDSHTSETTQKSIEAAIVSGILSAKIRPGTRLGENQLAVLFGVSRTRVREAMMRLETRGIVHVSPRRGWFVVEPSAEDA
IAVYEARRVVEAGLLRSMGVLTEEGRKALDIHLNEERNAMAAGDRQRLTYLMGDFHIRIAELSGNTIIVDILRDLTARTI
LISMLYQSEFHAAQSHEGHCRIFEAMQSGDFVRAAELSVEHLDEVEMGLDLTARPDPLSDLRNSLSLPLKAASAISRQSD
PRTTTSKEQ

Sequences:

>Translated_249_residues
MQDSHTSETTQKSIEAAIVSGILSAKIRPGTRLGENQLAVLFGVSRTRVREAMMRLETRGIVHVSPRRGWFVVEPSAEDA
IAVYEARRVVEAGLLRSMGVLTEEGRKALDIHLNEERNAMAAGDRQRLTYLMGDFHIRIAELSGNTIIVDILRDLTARTI
LISMLYQSEFHAAQSHEGHCRIFEAMQSGDFVRAAELSVEHLDEVEMGLDLTARPDPLSDLRNSLSLPLKAASAISRQSD
PRTTTSKEQ
>Mature_249_residues
MQDSHTSETTQKSIEAAIVSGILSAKIRPGTRLGENQLAVLFGVSRTRVREAMMRLETRGIVHVSPRRGWFVVEPSAEDA
IAVYEARRVVEAGLLRSMGVLTEEGRKALDIHLNEERNAMAAGDRQRLTYLMGDFHIRIAELSGNTIIVDILRDLTARTI
LISMLYQSEFHAAQSHEGHCRIFEAMQSGDFVRAAELSVEHLDEVEMGLDLTARPDPLSDLRNSLSLPLKAASAISRQSD
PRTTTSKEQ

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=188, Percent_Identity=26.5957446808511, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27648; Mature: 27648

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDSHTSETTQKSIEAAIVSGILSAKIRPGTRLGENQLAVLFGVSRTRVREAMMRLETRG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCC
IVHVSPRRGWFVVEPSAEDAIAVYEARRVVEAGLLRSMGVLTEEGRKALDIHLNEERNAM
EEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCH
AAGDRQRLTYLMGDFHIRIAELSGNTIIVDILRDLTARTILISMLYQSEFHAAQSHEGHC
HCCCHHHHHHEECCEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
RIFEAMQSGDFVRAAELSVEHLDEVEMGLDLTARPDPLSDLRNSLSLPLKAASAISRQSD
HHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCC
PRTTTSKEQ
CCCCCCCCC
>Mature Secondary Structure
MQDSHTSETTQKSIEAAIVSGILSAKIRPGTRLGENQLAVLFGVSRTRVREAMMRLETRG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCC
IVHVSPRRGWFVVEPSAEDAIAVYEARRVVEAGLLRSMGVLTEEGRKALDIHLNEERNAM
EEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCH
AAGDRQRLTYLMGDFHIRIAELSGNTIIVDILRDLTARTILISMLYQSEFHAAQSHEGHC
HCCCHHHHHHEECCEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
RIFEAMQSGDFVRAAELSVEHLDEVEMGLDLTARPDPLSDLRNSLSLPLKAASAISRQSD
HHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCC
PRTTTSKEQ
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA