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The map label for this gene is ydeP [H]

Identifier: 86360886

GI number: 86360886

Start: 165065

End: 165433

Strand: Reverse

Name: ydeP [H]

Synonym: RHE_PF00155

Alternate gene names: 86360886

Gene position: 165433-165065 (Counterclockwise)

Preceding gene: 86360890

Following gene: 86360880

Centisome position: 25.75

GC content: 62.33

Gene sequence:

>369_bases
ATGGCCAAGCCCCGCCACTCCCGCTTCGACTGCGCGCCTGGCTGTTCGGTTGAAGCGGCGATCAGCCTCATCGATGGCAA
ATGGAAATGTGTGATCCTCTTCCACCTGCTGGAAGGGACTATCCGCTTCAATGAGATCAGACGCCGCGTGCCCGCAGTCA
CCCAGCGGACGCTGACAAACCAGTTGCGCGAGCTTGAGATGGACGGGCTCATCGTGCGCAAGGTTTACGCCGAAGTGCCG
CCCAAGGTGGAGTACAGCCTCTCGGAGCTTGGGCTCAGCATGGCGCCCGTGCTCAGCGCGCTCAAGGAGTGGGGCGACTT
GAACATCAGCCGCTTCGGCAAGGCTCCGGCCTCGGCATTGGCCGCTTAA

Upstream 100 bases:

>100_bases
CATAAAAGTATCTCCTGGTTGCCGGAGACACAGTTAGTTCGTATTGTAATTCTGCGCGATACGCACAAAAATTGCCTATA
GTATCAGAAAGGATACCATT

Downstream 100 bases:

>100_bases
GTCCCGGAGATGGAAATCTCCGCTGACGGATCCATGATCGCCTCGCCATGTTTGCTGGTGTTTCCAATGAAACTGGAGCA
CCTGGAGCACATGGATGCAA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MAKPRHSRFDCAPGCSVEAAISLIDGKWKCVILFHLLEGTIRFNEIRRRVPAVTQRTLTNQLRELEMDGLIVRKVYAEVP
PKVEYSLSELGLSMAPVLSALKEWGDLNISRFGKAPASALAA

Sequences:

>Translated_122_residues
MAKPRHSRFDCAPGCSVEAAISLIDGKWKCVILFHLLEGTIRFNEIRRRVPAVTQRTLTNQLRELEMDGLIVRKVYAEVP
PKVEYSLSELGLSMAPVLSALKEWGDLNISRFGKAPASALAA
>Mature_121_residues
AKPRHSRFDCAPGCSVEAAISLIDGKWKCVILFHLLEGTIRFNEIRRRVPAVTQRTLTNQLRELEMDGLIVRKVYAEVPP
KVEYSLSELGLSMAPVLSALKEWGDLNISRFGKAPASALAA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=98, Percent_Identity=37.7551020408163, Blast_Score=78, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13536; Mature: 13405

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPRHSRFDCAPGCSVEAAISLIDGKWKCVILFHLLEGTIRFNEIRRRVPAVTQRTLTN
CCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
QLRELEMDGLIVRKVYAEVPPKVEYSLSELGLSMAPVLSALKEWGDLNISRFGKAPASAL
HHHHHHHCCHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHCCCCHHHH
AA
CC
>Mature Secondary Structure 
AKPRHSRFDCAPGCSVEAAISLIDGKWKCVILFHLLEGTIRFNEIRRRVPAVTQRTLTN
CCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
QLRELEMDGLIVRKVYAEVPPKVEYSLSELGLSMAPVLSALKEWGDLNISRFGKAPASAL
HHHHHHHCCHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHCCCCHHHH
AA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]