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The map label for this gene is cph2 [H]

Identifier: 86360811

GI number: 86360811

Start: 80725

End: 81975

Strand: Reverse

Name: cph2 [H]

Synonym: RHE_PF00078

Alternate gene names: 86360811

Gene position: 81975-80725 (Counterclockwise)

Preceding gene: 86360815

Following gene: 86360799

Centisome position: 12.76

GC content: 62.59

Gene sequence:

>1251_bases
GTGCCGCCACGGCCGTTGACTGGCGCAATGGCGGATGAGGTCGAACGTCTTTTATCGGGCCGAACCCGCGATATCCGCCT
GACGGGCGAGCTGCGCCGCCGTTTTGACGAAAGGTTATGGCGGCAGACGGCGAAGGTCATCCGTTCCTGGATGATTTGGG
TCGCATTTGTCGATGTCCTGACGCTGGCGCTGAACGCCGCCCTGCTTCCGAGACAGGTCGTGCTGTCGATGATTGCTCCC
GCCTGCCTTTTGCCGCCGGCGGCAATTTTGACGGCTGTCGTTTGGAATAAGCCGCGCCCGGCGGCCGTTCAGCGGGCGTC
GCTGCTTCTAGGAATGTTCCTTATTCTCCTCTCGGTCGGGCTTGTCGGCGTTTTTGCCGGCGGCGAATTTTACGAGCGGC
ATCTGAGCATCATGTTGTTCGTCGCGACGAGCGCAATCACCATTTTCAGCGTGCCGCTGGCCTGGACGATCGCAATCGCC
TGTTATGCCCTTTGTCTCTACCTCATCCTTCAATGGCACAACCCGCTCTTGGAAGCGGGCAGTGTCGTCGCCGCGACCCT
GTTCTTCTCCTGTGGGATCATCGCGACGGTGGTCGCCAGGCGAACGATGAACATCCTGGCGCAAAAGACATTTCTTTTGG
ACTGCAGGGATCAGCGCCGTGTCGCGGAGCTTGCCGACGCGAACGCCCGATTGGAGCGGCTGGCCAGAACCGACCCGCTC
ACCGGGATCGCCAACCGCCGTTGGATGATGGAAACGCTCGAGAGTCTCTGGCGCCACGGCCGTGAAACCGGCATCGTCGC
CATGCTGATGTGCGACATCGACCACTTCAAGGGGCTGAACGACAAGCTCGGACATGGCGAAGGCGATCGCTGCCTCGTCA
AGGTTGCCGGCATCATCCAGAGCTGCGTGCGCGCCGATCGCGATCTCGTCTCGCGACATGGCGGCGAGGAGTTTCTCGTC
GTTCTTCCTGATGTCGATGAAGAAGAGGCCGTCGCGGTCGCCAGGCGAATACGCGAGAGCGTGGAAGCAGCCGCCCTGCC
GAACCCGGCCTCCAGCGTGGGCCCCTCGGTGACGCTGAGCGTCGGCGTGGCGTTCAAGTCTAGGGCCGACACCGGTGTTT
CACTGGCAAATCTCCAGCACGAAGCCGACATGGCGCTTTATCGCGCCAAGGAAGCCGGACGCAACCAGGTCTCGGTCTTT
CGTCGTCCGCCTGTCGCCACCGGGCAGACCGCCGCGCGACGCCAGGGGTAG

Upstream 100 bases:

>100_bases
TGCGGTTGCGTAAGCCTTGCCGAGCGCTGCATCGCGGCTAGTTAAATCAAAGATGAGAGATGCCAAAAGCACTTCCTCTG
AAACCTCTCCAGCCGGGTCT

Downstream 100 bases:

>100_bases
TGGATCGGCAGATCGATCAGAGCTCCTTCTCCCGAACGATCATCCCGCCCGGAGTCAAGATAATTGGCGAGCGGGAAGGT
CGGCTCTATGGCCTTTCGGG

Product: putative two-component response regulator protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MPPRPLTGAMADEVERLLSGRTRDIRLTGELRRRFDERLWRQTAKVIRSWMIWVAFVDVLTLALNAALLPRQVVLSMIAP
ACLLPPAAILTAVVWNKPRPAAVQRASLLLGMFLILLSVGLVGVFAGGEFYERHLSIMLFVATSAITIFSVPLAWTIAIA
CYALCLYLILQWHNPLLEAGSVVAATLFFSCGIIATVVARRTMNILAQKTFLLDCRDQRRVAELADANARLERLARTDPL
TGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKGLNDKLGHGEGDRCLVKVAGIIQSCVRADRDLVSRHGGEEFLV
VLPDVDEEEAVAVARRIRESVEAAALPNPASSVGPSVTLSVGVAFKSRADTGVSLANLQHEADMALYRAKEAGRNQVSVF
RRPPVATGQTAARRQG

Sequences:

>Translated_416_residues
MPPRPLTGAMADEVERLLSGRTRDIRLTGELRRRFDERLWRQTAKVIRSWMIWVAFVDVLTLALNAALLPRQVVLSMIAP
ACLLPPAAILTAVVWNKPRPAAVQRASLLLGMFLILLSVGLVGVFAGGEFYERHLSIMLFVATSAITIFSVPLAWTIAIA
CYALCLYLILQWHNPLLEAGSVVAATLFFSCGIIATVVARRTMNILAQKTFLLDCRDQRRVAELADANARLERLARTDPL
TGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKGLNDKLGHGEGDRCLVKVAGIIQSCVRADRDLVSRHGGEEFLV
VLPDVDEEEAVAVARRIRESVEAAALPNPASSVGPSVTLSVGVAFKSRADTGVSLANLQHEADMALYRAKEAGRNQVSVF
RRPPVATGQTAARRQG
>Mature_415_residues
PPRPLTGAMADEVERLLSGRTRDIRLTGELRRRFDERLWRQTAKVIRSWMIWVAFVDVLTLALNAALLPRQVVLSMIAPA
CLLPPAAILTAVVWNKPRPAAVQRASLLLGMFLILLSVGLVGVFAGGEFYERHLSIMLFVATSAITIFSVPLAWTIAIAC
YALCLYLILQWHNPLLEAGSVVAATLFFSCGIIATVVARRTMNILAQKTFLLDCRDQRRVAELADANARLERLARTDPLT
GIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKGLNDKLGHGEGDRCLVKVAGIIQSCVRADRDLVSRHGGEEFLVV
LPDVDEEEAVAVARRIRESVEAAALPNPASSVGPSVTLSVGVAFKSRADTGVSLANLQHEADMALYRAKEAGRNQVSVFR
RPPVATGQTAARRQG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=41.6666666666667, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1786584, Length=202, Percent_Identity=31.1881188118812, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=36.7567567567568, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787802, Length=167, Percent_Identity=35.3293413173653, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI87082007, Length=182, Percent_Identity=37.3626373626374, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=37.3493975903614, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=34.5238095238095, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI1787541, Length=187, Percent_Identity=34.7593582887701, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081977, Length=174, Percent_Identity=31.0344827586207, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788381, Length=181, Percent_Identity=31.4917127071823, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=34.3373493975904, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787056, Length=165, Percent_Identity=32.1212121212121, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 45734; Mature: 45603

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPRPLTGAMADEVERLLSGRTRDIRLTGELRRRFDERLWRQTAKVIRSWMIWVAFVDVL
CCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLALNAALLPRQVVLSMIAPACLLPPAAILTAVVWNKPRPAAVQRASLLLGMFLILLSVG
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LVGVFAGGEFYERHLSIMLFVATSAITIFSVPLAWTIAIACYALCLYLILQWHNPLLEAG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
SVVAATLFFSCGIIATVVARRTMNILAQKTFLLDCRDQRRVAELADANARLERLARTDPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
TGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKGLNDKLGHGEGDRCLVKVAGIIQ
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHCCCCCCCCCCCCCHHHHHHHHHHH
SCVRADRDLVSRHGGEEFLVVLPDVDEEEAVAVARRIRESVEAAALPNPASSVGPSVTLS
HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEEE
VGVAFKSRADTGVSLANLQHEADMALYRAKEAGRNQVSVFRRPPVATGQTAARRQG
EEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCHHHCCC
>Mature Secondary Structure 
PPRPLTGAMADEVERLLSGRTRDIRLTGELRRRFDERLWRQTAKVIRSWMIWVAFVDVL
CCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLALNAALLPRQVVLSMIAPACLLPPAAILTAVVWNKPRPAAVQRASLLLGMFLILLSVG
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LVGVFAGGEFYERHLSIMLFVATSAITIFSVPLAWTIAIACYALCLYLILQWHNPLLEAG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
SVVAATLFFSCGIIATVVARRTMNILAQKTFLLDCRDQRRVAELADANARLERLARTDPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
TGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKGLNDKLGHGEGDRCLVKVAGIIQ
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHCCCCCCCCCCCCCHHHHHHHHHHH
SCVRADRDLVSRHGGEEFLVVLPDVDEEEAVAVARRIRESVEAAALPNPASSVGPSVTLS
HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEEE
VGVAFKSRADTGVSLANLQHEADMALYRAKEAGRNQVSVFRRPPVATGQTAARRQG
EEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]