Click here to switch to the map view.

The map label for this gene is sigD [H]

Identifier: 86360790

GI number: 86360790

Start: 57722

End: 58270

Strand: Reverse

Name: sigD [H]

Synonym: RHE_PF00056

Alternate gene names: 86360790

Gene position: 58270-57722 (Counterclockwise)

Preceding gene: 86360791

Following gene: 86360789

Centisome position: 9.07

GC content: 60.84

Gene sequence:

>549_bases
ATGACCACCGCCCATTCGGAAGAAGCCCTGAAAGCATTGATGCTTCTGTCCCTTGACGGGGACGAGGCTGCCTATCGGCG
TTTGCTGACGGCTTTGCGCGTGCTGCTTGTCGGCTATTACAGCCGCAGGATGGCTGCGGCGACGAGAGCGGACATGGAAG
ATCTGGTCCAGGAGACATTGCTGGCACTGCATTCCCGGCGATCTACCTATGACCGGAACAGACCTTTTACCGCCTGGTTT
TTCTCGATCGCCCGGTACAAGCTGATCGACCATCATCGCGGCCGTGGCGGACGCAGGCTGGCCGAGACCGAGCTTGATGA
CGAGATCGAAAGCGACTTCAGCGAGGATCGGCTGACCGCCCGCATGGATGTCGAGCGGTTGCTCGACGGCTTGCCGTTGA
GACAGCAGGAACTGATCCGGCAGGTGAAGCTCGAGGGCAGCTCGGTCGCGGACGCCGCAAACCGCACCGGTCAGTCCGAG
TCGGCGGTGAAAGTCAGCATCCATCGGGCGCTCAAGGCGATTGGAGAAAGACTGCGAGGCACATCGTGA

Upstream 100 bases:

>100_bases
GCGTTACAGCTTGACGTGCATGTGGTAGAGCTGCAGTTCAAAAATCTTTGTTTTTCGCTGTAACCGATTGTCCGTTTTCA
CGAATGAGCTCTTTGACAGC

Downstream 100 bases:

>100_bases
CAAAGACAGACGATCTCATCGAACGATTGGCAAGCGACCTCAAGCCGGTGCCGCGCAACGCGCTATGGCGCCGCTTTGCG
CTCGGCATACTGCCGGCCCT

Product: RNA polymerase ECF-subfamily sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTTAHSEEALKALMLLSLDGDEAAYRRLLTALRVLLVGYYSRRMAAATRADMEDLVQETLLALHSRRSTYDRNRPFTAWF
FSIARYKLIDHHRGRGGRRLAETELDDEIESDFSEDRLTARMDVERLLDGLPLRQQELIRQVKLEGSSVADAANRTGQSE
SAVKVSIHRALKAIGERLRGTS

Sequences:

>Translated_182_residues
MTTAHSEEALKALMLLSLDGDEAAYRRLLTALRVLLVGYYSRRMAAATRADMEDLVQETLLALHSRRSTYDRNRPFTAWF
FSIARYKLIDHHRGRGGRRLAETELDDEIESDFSEDRLTARMDVERLLDGLPLRQQELIRQVKLEGSSVADAANRTGQSE
SAVKVSIHRALKAIGERLRGTS
>Mature_181_residues
TTAHSEEALKALMLLSLDGDEAAYRRLLTALRVLLVGYYSRRMAAATRADMEDLVQETLLALHSRRSTYDRNRPFTAWFF
SIARYKLIDHHRGRGGRRLAETELDDEIESDFSEDRLTARMDVERLLDGLPLRQQELIRQVKLEGSSVADAANRTGQSES
AVKVSIHRALKAIGERLRGTS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20645; Mature: 20514

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAHSEEALKALMLLSLDGDEAAYRRLLTALRVLLVGYYSRRMAAATRADMEDLVQETL
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALHSRRSTYDRNRPFTAWFFSIARYKLIDHHRGRGGRRLAETELDDEIESDFSEDRLTA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHH
RMDVERLLDGLPLRQQELIRQVKLEGSSVADAANRTGQSESAVKVSIHRALKAIGERLRG
HHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
TS
CC
>Mature Secondary Structure 
TTAHSEEALKALMLLSLDGDEAAYRRLLTALRVLLVGYYSRRMAAATRADMEDLVQETL
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALHSRRSTYDRNRPFTAWFFSIARYKLIDHHRGRGGRRLAETELDDEIESDFSEDRLTA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHH
RMDVERLLDGLPLRQQELIRQVKLEGSSVADAANRTGQSESAVKVSIHRALKAIGERLRG
HHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
TS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]