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The map label for this gene is 86360789

Identifier: 86360789

GI number: 86360789

Start: 57081

End: 57725

Strand: Reverse

Name: 86360789

Synonym: RHE_PF00055

Alternate gene names: NA

Gene position: 57725-57081 (Counterclockwise)

Preceding gene: 86360790

Following gene: 86360788

Centisome position: 8.98

GC content: 62.95

Gene sequence:

>645_bases
GTGACAAAGACAGACGATCTCATCGAACGATTGGCAAGCGACCTCAAGCCGGTGCCGCGCAACGCGCTATGGCGCCGCTT
TGCGCTCGGCATACTGCCGGCCCTCGGACTTTCCCTTCTGCTGATGCTGATCATTCTTGGTCCCCGAGTCGATATGCCCA
ACGTGCTGACGCTGCCGGTCTTCTGGATCAAGTCCGCCTATAATGCCCTGATTGCGGCGGCCGCCTTTGCCACCGTTTTT
CGGCTTTCCCGACCCGATGGTTCCGAGGGGCGCTTTTTTGGTTTGCTTGGATTGATCTTCGCCGCCATGGCAGCCGTCGC
GGTCATCCAGCTCTTGACGGCGCCGAGCGAGAGCTATCGATTGCTGATCCTCGGCTCCTCGGCGCTGCATTGCCCCCCGC
TCATCGCAGGCTTTGCGATCCCGGTCTATGCCGGCACGGTCTGGGCGCTGCGCCGCGCGGCGCCGGTGGATCTGCGGCTG
ACCGGCTTTGTCGCCGGCATTGCCGCGGGAGGAGCCGGCGCCTGGGTCTATTCCTGGTTCTGCACCGAAAACGGCATGCC
TTTCGTGTTGATCTGGTACACGCTCGGCATCTTGCTCATCGGTGCCGTCGGCGCCATGACCGGACCTCGTCTGCTCCGTT
GGTAG

Upstream 100 bases:

>100_bases
TCGCGGACGCCGCAAACCGCACCGGTCAGTCCGAGTCGGCGGTGAAAGTCAGCATCCATCGGGCGCTCAAGGCGATTGGA
GAAAGACTGCGAGGCACATC

Downstream 100 bases:

>100_bases
ATCCCTCCTCAATTCGTGACCGGAACATTCCGGGTTTCGCCTGGTTCGAGGGGCGAAGGAGAGAAAGATGAACGACGAAT
CGGATCGTCGCGCTTTCATG

Product: hypothetical protein

Products: NA

Alternate protein names: Extracytoplasmic Function AlteRNAtive Sigma Factor; ECF-Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MTKTDDLIERLASDLKPVPRNALWRRFALGILPALGLSLLLMLIILGPRVDMPNVLTLPVFWIKSAYNALIAAAAFATVF
RLSRPDGSEGRFFGLLGLIFAAMAAVAVIQLLTAPSESYRLLILGSSALHCPPLIAGFAIPVYAGTVWALRRAAPVDLRL
TGFVAGIAAGGAGAWVYSWFCTENGMPFVLIWYTLGILLIGAVGAMTGPRLLRW

Sequences:

>Translated_214_residues
MTKTDDLIERLASDLKPVPRNALWRRFALGILPALGLSLLLMLIILGPRVDMPNVLTLPVFWIKSAYNALIAAAAFATVF
RLSRPDGSEGRFFGLLGLIFAAMAAVAVIQLLTAPSESYRLLILGSSALHCPPLIAGFAIPVYAGTVWALRRAAPVDLRL
TGFVAGIAAGGAGAWVYSWFCTENGMPFVLIWYTLGILLIGAVGAMTGPRLLRW
>Mature_213_residues
TKTDDLIERLASDLKPVPRNALWRRFALGILPALGLSLLLMLIILGPRVDMPNVLTLPVFWIKSAYNALIAAAAFATVFR
LSRPDGSEGRFFGLLGLIFAAMAAVAVIQLLTAPSESYRLLILGSSALHCPPLIAGFAIPVYAGTVWALRRAAPVDLRLT
GFVAGIAAGGAGAWVYSWFCTENGMPFVLIWYTLGILLIGAVGAMTGPRLLRW

Specific function: Unknown

COG id: COG4944

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22995; Mature: 22864

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTDDLIERLASDLKPVPRNALWRRFALGILPALGLSLLLMLIILGPRVDMPNVLTLPV
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
FWIKSAYNALIAAAAFATVFRLSRPDGSEGRFFGLLGLIFAAMAAVAVIQLLTAPSESYR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
LLILGSSALHCPPLIAGFAIPVYAGTVWALRRAAPVDLRLTGFVAGIAAGGAGAWVYSWF
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCHHEEEEE
CTENGMPFVLIWYTLGILLIGAVGAMTGPRLLRW
ECCCCCCEEEHHHHHHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure 
TKTDDLIERLASDLKPVPRNALWRRFALGILPALGLSLLLMLIILGPRVDMPNVLTLPV
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
FWIKSAYNALIAAAAFATVFRLSRPDGSEGRFFGLLGLIFAAMAAVAVIQLLTAPSESYR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
LLILGSSALHCPPLIAGFAIPVYAGTVWALRRAAPVDLRLTGFVAGIAAGGAGAWVYSWF
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCHHEEEEE
CTENGMPFVLIWYTLGILLIGAVGAMTGPRLLRW
ECCCCCCEEEHHHHHHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA