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The map label for this gene is ydeM [C]

Identifier: 85859244

GI number: 85859244

Start: 1427682

End: 1429115

Strand: Direct

Name: ydeM [C]

Synonym: SYN_00279

Alternate gene names: 85859244

Gene position: 1427682-1429115 (Clockwise)

Preceding gene: 85859243

Following gene: 85859245

Centisome position: 44.91

GC content: 35.36

Gene sequence:

>1434_bases
TTGCGAATGTATTCCGACAAGCTGCAAACAGATACTGTTTTAAAGAAATCTCCATTTCTGGTTGTGAACCAGATAGATAA
CAATGAAGTGCGAATTTACAGTAAATTGCATGGCAATTTATCGTGTTTTAGCCCTGATATTAATGAAGTCTTGAAGTTCT
TTGAATCTCCAGTTGCTGCAGATGAGGCTGTACATAAAATATCGAAGATTTATAAGTGCGATTCATTCGGTTTGATTAAA
GAATTATACGACAAACGATTTTTAGTCGAAGAAAACAAAAATGGAAAAGATATATTTCAGGAGTATGTTGAAAAAGTAAG
ATCTAAGAATAAAATTCCGAATATTACAAAGGTTACATTTTTGACTTCTGCCAAATGTAATTTGGCATGCAAAGGCTGCT
ATCATCATTTTTATGATTTTAAAAGCAATGATATGAACAACGATTTTGCGAGTCAGTTTGTGGAGGGGCTGTTTACTTAT
TTGAAAAAGAGAGAAATTACCACGTTGCTGATATCATTTCTTGGTTATGAACCTTTATTGAATTTTAAAGCGCTCCGCGG
GATTTATGAGAATGCAGACCGAATGAGTAAAAAATACAATATAGATACTTCATTTAAATTGTTTACAAATGCCTTTAAAT
TAAACAGGAAGATATTCAATTGGATCAGGCACAATAAATCCAAGTTGGGAATAATGGTCAGTTTAGATGGAATAGAGGAA
GACAATGATAAACGAAGAGTAGACTTAACTGGTCAAGGAACATATGACAGAGTTGTTGAAAATTTAAAGAGGATTCTTGC
GGCTGATATAAAATGCAGGGTGATTACCGTATTAAGTAAATTAAACATCTCTAATATTGAGAAGTTTGTAGATGAAATGG
CTGCAATAGGAGTTAAGGGTATTACGGCAAATATATTCTGTGGTCATTCCGAAGAAGAGCGACAGCTTGAATTGACGGAA
ACAGAAAAGTTTGAAGCACTGAAAAGAATGGAGCAGGCAACTGAAAAATATGACATGGAATTTGATGGTGAATGGAAATT
TGCAGTCGTGCAAATGATTACAGGGGCTTATTTTTCTTGCCCTGCGGGAATAAAACAATTGGTTTTGTCCGCAGATGGCA
CCATATATCCTTGTCAACGATTTGCCGGGACAAACATGAATTTCGGGAGTTATCATGAAGATTTTTGGCAAACAATACTT
GATGGCCAATGTGAAGGTTATAATCGTTGGACTGCAGCGCTTTATGATCGAGTGGCGGATAGAATAAAGGGGGACGAAGC
AGACCTTGCGGGCTGGAGTTGTCCTTTTGTTCCTTTTATAAGAGAGCAATTCATAAGCATGAATTTTGATAGAGTGTTAA
ATGAAAATCTTCTTGATTATTATCTAACACGTCCTTTGAACAGGATTCTTTCGAACTCACCAATAAATTATTGA

Upstream 100 bases:

>100_bases
ATTTCTTAGGTATTCCTGTTTCACTTGATTTCACATGCAATAAGCTCGGAAAAGAATTGGTATTTAATCAATATTTAGAA
AATGTCATAACTACAGAAGA

Downstream 100 bases:

>100_bases
TGTGAATATATAAACAAACCGATTATGTATAAGGAGTAGGAAAATTTATGAGTGATTCTGCAGAAAAGACACAGAAAGAA
GTTAAGTTTAACCAGGATAA

Product: radical SAM protein

Products: NA

Alternate protein names: Radical SAM Domain-Containing Protein; Arylsulfatase Regulator; Transcriptional Regulator; Fe-S Oxidoreductase; Radical SAM Family Protein; Radical Sam Family Protein; Heme Biosynthesis Family Protein; Transcriptional Regulatory Protein; AstB/ChuR-Related Protein; Radical Sam Domain Protein; Regulatory Protein; Heme Biosynthesis Related Protein; Radical SAM Superfamily Protein; Heme Biosynthesis; Arylsulfatase Regulatory Protein

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MRMYSDKLQTDTVLKKSPFLVVNQIDNNEVRIYSKLHGNLSCFSPDINEVLKFFESPVAADEAVHKISKIYKCDSFGLIK
ELYDKRFLVEENKNGKDIFQEYVEKVRSKNKIPNITKVTFLTSAKCNLACKGCYHHFYDFKSNDMNNDFASQFVEGLFTY
LKKREITTLLISFLGYEPLLNFKALRGIYENADRMSKKYNIDTSFKLFTNAFKLNRKIFNWIRHNKSKLGIMVSLDGIEE
DNDKRRVDLTGQGTYDRVVENLKRILAADIKCRVITVLSKLNISNIEKFVDEMAAIGVKGITANIFCGHSEEERQLELTE
TEKFEALKRMEQATEKYDMEFDGEWKFAVVQMITGAYFSCPAGIKQLVLSADGTIYPCQRFAGTNMNFGSYHEDFWQTIL
DGQCEGYNRWTAALYDRVADRIKGDEADLAGWSCPFVPFIREQFISMNFDRVLNENLLDYYLTRPLNRILSNSPINY

Sequences:

>Translated_477_residues
MRMYSDKLQTDTVLKKSPFLVVNQIDNNEVRIYSKLHGNLSCFSPDINEVLKFFESPVAADEAVHKISKIYKCDSFGLIK
ELYDKRFLVEENKNGKDIFQEYVEKVRSKNKIPNITKVTFLTSAKCNLACKGCYHHFYDFKSNDMNNDFASQFVEGLFTY
LKKREITTLLISFLGYEPLLNFKALRGIYENADRMSKKYNIDTSFKLFTNAFKLNRKIFNWIRHNKSKLGIMVSLDGIEE
DNDKRRVDLTGQGTYDRVVENLKRILAADIKCRVITVLSKLNISNIEKFVDEMAAIGVKGITANIFCGHSEEERQLELTE
TEKFEALKRMEQATEKYDMEFDGEWKFAVVQMITGAYFSCPAGIKQLVLSADGTIYPCQRFAGTNMNFGSYHEDFWQTIL
DGQCEGYNRWTAALYDRVADRIKGDEADLAGWSCPFVPFIREQFISMNFDRVLNENLLDYYLTRPLNRILSNSPINY
>Mature_477_residues
MRMYSDKLQTDTVLKKSPFLVVNQIDNNEVRIYSKLHGNLSCFSPDINEVLKFFESPVAADEAVHKISKIYKCDSFGLIK
ELYDKRFLVEENKNGKDIFQEYVEKVRSKNKIPNITKVTFLTSAKCNLACKGCYHHFYDFKSNDMNNDFASQFVEGLFTY
LKKREITTLLISFLGYEPLLNFKALRGIYENADRMSKKYNIDTSFKLFTNAFKLNRKIFNWIRHNKSKLGIMVSLDGIEE
DNDKRRVDLTGQGTYDRVVENLKRILAADIKCRVITVLSKLNISNIEKFVDEMAAIGVKGITANIFCGHSEEERQLELTE
TEKFEALKRMEQATEKYDMEFDGEWKFAVVQMITGAYFSCPAGIKQLVLSADGTIYPCQRFAGTNMNFGSYHEDFWQTIL
DGQCEGYNRWTAALYDRVADRIKGDEADLAGWSCPFVPFIREQFISMNFDRVLNENLLDYYLTRPLNRILSNSPINY

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55270; Mature: 55270

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMYSDKLQTDTVLKKSPFLVVNQIDNNEVRIYSKLHGNLSCFSPDINEVLKFFESPVAA
CCCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCEECCCCHHHHHHHHCCCCCH
DEAVHKISKIYKCDSFGLIKELYDKRFLVEENKNGKDIFQEYVEKVRSKNKIPNITKVTF
HHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
LTSAKCNLACKGCYHHFYDFKSNDMNNDFASQFVEGLFTYLKKREITTLLISFLGYEPLL
EECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
NFKALRGIYENADRMSKKYNIDTSFKLFTNAFKLNRKIFNWIRHNKSKLGIMVSLDGIEE
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
DNDKRRVDLTGQGTYDRVVENLKRILAADIKCRVITVLSKLNISNIEKFVDEMAAIGVKG
CCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
ITANIFCGHSEEERQLELTETEKFEALKRMEQATEKYDMEFDGEWKFAVVQMITGAYFSC
CEEEEEECCCCHHHCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHCC
PAGIKQLVLSADGTIYPCQRFAGTNMNFGSYHEDFWQTILDGQCEGYNRWTAALYDRVAD
CHHHHHHHHHCCCCEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
RIKGDEADLAGWSCPFVPFIREQFISMNFDRVLNENLLDYYLTRPLNRILSNSPINY
HHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRMYSDKLQTDTVLKKSPFLVVNQIDNNEVRIYSKLHGNLSCFSPDINEVLKFFESPVAA
CCCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCEECCCCHHHHHHHHCCCCCH
DEAVHKISKIYKCDSFGLIKELYDKRFLVEENKNGKDIFQEYVEKVRSKNKIPNITKVTF
HHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
LTSAKCNLACKGCYHHFYDFKSNDMNNDFASQFVEGLFTYLKKREITTLLISFLGYEPLL
EECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
NFKALRGIYENADRMSKKYNIDTSFKLFTNAFKLNRKIFNWIRHNKSKLGIMVSLDGIEE
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
DNDKRRVDLTGQGTYDRVVENLKRILAADIKCRVITVLSKLNISNIEKFVDEMAAIGVKG
CCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
ITANIFCGHSEEERQLELTETEKFEALKRMEQATEKYDMEFDGEWKFAVVQMITGAYFSC
CEEEEEECCCCHHHCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHCC
PAGIKQLVLSADGTIYPCQRFAGTNMNFGSYHEDFWQTILDGQCEGYNRWTAALYDRVAD
CHHHHHHHHHCCCCEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
RIKGDEADLAGWSCPFVPFIREQFISMNFDRVLNENLLDYYLTRPLNRILSNSPINY
HHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA