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The map label for this gene is yjcF [C]

Identifier: 85858351

GI number: 85858351

Start: 516749

End: 518074

Strand: Direct

Name: yjcF [C]

Synonym: SYN_02341

Alternate gene names: 85858351

Gene position: 516749-518074 (Clockwise)

Preceding gene: 85858350

Following gene: 85858354

Centisome position: 16.25

GC content: 49.17

Gene sequence:

>1326_bases
ATGTGGATACATGCAAATATCTGGATTCGACGACTGGATATAGGGAGCTTGTACATGGAGACAGAGAAACTACTCAAGAT
TCTGAGGGAGGGGCCAGAAATTTGGAATCAGTTGAGATCCGAAAATCCACAGCCGTTCATTGACCTCAGTGGCACAAACC
TCAGCGGGACAAACCTCAACAGGGTTAATCTCAGTGGGACAAGCCTCAGGAAGGCAGACCTCTGTAAAGCATATCTTAAC
GGTGCAAACCTGAGCAAGGCAGATCTCAACGGGGCAAATCTAGAGAAGGCGGAACTCATAGGAGCCAATCTCAGCAAGGC
CAACCTCAAGAAGGCAGACCTCAGCGGTGCGGACCTTGACGGGGCTAATCTCAGCGGGGCTAACCTCTGGATGGCAGATC
TCATTGGTACAAACCTCTGGAAGGCCAACCTCCAAGGGGTAAACCTCGGCGGGGCAAACCTCAGAAAGGCATGTCTCAGT
GGAGCGGACCTCCGAGAGGCATACCTTTTTAAAGCGAACCTCTGGAAGGCAAGCCTCCATGAAACGGATCTCCACGGGGC
AAACCTTAACGATGCTTACCTCAGCTTAGCGGACCTCAGCAGGGCTAACCTCAGTAATGCAACTCTCAGGATGGCGGACC
TCAGTGGGGCTAACTTGCAAGAGGTAAACCTCTGTCATGCGGTTGTGGTACAAGCTGATTTAAAGTACGCCAAACTCAAA
CATTGTAGAATTTATGGGATTTCGGCGTGGGGAGTAGAGATCAATGAATATACTGAGCAACGGGACCTGATCATTACCCC
TATTAACCAATCATCGATCACCGTCGATAACCTCGAAGTTGCTCAGTTCATCGACCTTCTATTGAATAATGTAAAAATTC
GCCACATTATCGACGCTATAACGTCAAAGGTTGTCTTGATTCTGGGACGGTTCAGTAAGGAGAGAAAGACTGTTCTGGAT
GCCCTACGGGAGGAACTTTATCGGAGAGACCTTACACCAATAATTCTTGATTTCGAAAAACCTGCCAGCAGGGACATAAC
GGACACCGTTGAGACCATAGCTCGGATGTCTAAGTTTGTTATCGCCGATCTCACTGATCCCAGCAGCATCCCGCATGAAC
TCACCGCAATCGTGCCTTTACTCCGGAAGACCCCTGTGATTCCGCTGAGACATGTTGGCTCGGGAGACTATAGTATGTTT
GATGAACTGAAGAACTACTCTTGGGTTTTGAAGATCCACGAATACGACGATGCTGGTTCCCTACGCTCGAACTTGCCGAT
GGTAATTGCTCCGGCTGATCAGATGGCGGAGAAACTGCGTAAGTAA

Upstream 100 bases:

>100_bases
GCAGGATTCCTTCCAAATCAAAACAGGGAAATCACCGAATTCTCTCTTCCTAAATTGATGTTCATCGAGCAAGGATAATG
ATGTATATTTCAAACATGAA

Downstream 100 bases:

>100_bases
GGGAAATTTTCTCTCCCCATCAAACTGGCATGGGGGGCCGAATCGGGTAAATCTCGCCTTGAGGGGAAAATATTATTCAG
GGCAAAGTAGGGTGAGCTCT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MWIHANIWIRRLDIGSLYMETEKLLKILREGPEIWNQLRSENPQPFIDLSGTNLSGTNLNRVNLSGTSLRKADLCKAYLN
GANLSKADLNGANLEKAELIGANLSKANLKKADLSGADLDGANLSGANLWMADLIGTNLWKANLQGVNLGGANLRKACLS
GADLREAYLFKANLWKASLHETDLHGANLNDAYLSLADLSRANLSNATLRMADLSGANLQEVNLCHAVVVQADLKYAKLK
HCRIYGISAWGVEINEYTEQRDLIITPINQSSITVDNLEVAQFIDLLLNNVKIRHIIDAITSKVVLILGRFSKERKTVLD
ALREELYRRDLTPIILDFEKPASRDITDTVETIARMSKFVIADLTDPSSIPHELTAIVPLLRKTPVIPLRHVGSGDYSMF
DELKNYSWVLKIHEYDDAGSLRSNLPMVIAPADQMAEKLRK

Sequences:

>Translated_441_residues
MWIHANIWIRRLDIGSLYMETEKLLKILREGPEIWNQLRSENPQPFIDLSGTNLSGTNLNRVNLSGTSLRKADLCKAYLN
GANLSKADLNGANLEKAELIGANLSKANLKKADLSGADLDGANLSGANLWMADLIGTNLWKANLQGVNLGGANLRKACLS
GADLREAYLFKANLWKASLHETDLHGANLNDAYLSLADLSRANLSNATLRMADLSGANLQEVNLCHAVVVQADLKYAKLK
HCRIYGISAWGVEINEYTEQRDLIITPINQSSITVDNLEVAQFIDLLLNNVKIRHIIDAITSKVVLILGRFSKERKTVLD
ALREELYRRDLTPIILDFEKPASRDITDTVETIARMSKFVIADLTDPSSIPHELTAIVPLLRKTPVIPLRHVGSGDYSMF
DELKNYSWVLKIHEYDDAGSLRSNLPMVIAPADQMAEKLRK
>Mature_441_residues
MWIHANIWIRRLDIGSLYMETEKLLKILREGPEIWNQLRSENPQPFIDLSGTNLSGTNLNRVNLSGTSLRKADLCKAYLN
GANLSKADLNGANLEKAELIGANLSKANLKKADLSGADLDGANLSGANLWMADLIGTNLWKANLQGVNLGGANLRKACLS
GADLREAYLFKANLWKASLHETDLHGANLNDAYLSLADLSRANLSNATLRMADLSGANLQEVNLCHAVVVQADLKYAKLK
HCRIYGISAWGVEINEYTEQRDLIITPINQSSITVDNLEVAQFIDLLLNNVKIRHIIDAITSKVVLILGRFSKERKTVLD
ALREELYRRDLTPIILDFEKPASRDITDTVETIARMSKFVIADLTDPSSIPHELTAIVPLLRKTPVIPLRHVGSGDYSMF
DELKNYSWVLKIHEYDDAGSLRSNLPMVIAPADQMAEKLRK

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=147, Percent_Identity=38.0952380952381, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI221377802, Length=160, Percent_Identity=37.5, Blast_Score=88, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 48987; Mature: 48987

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIHANIWIRRLDIGSLYMETEKLLKILREGPEIWNQLRSENPQPFIDLSGTNLSGTNLN
CEEEEEEEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCE
RVNLSGTSLRKADLCKAYLNGANLSKADLNGANLEKAELIGANLSKANLKKADLSGADLD
EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
GANLSGANLWMADLIGTNLWKANLQGVNLGGANLRKACLSGADLREAYLFKANLWKASLH
CCCCCCCHHHHHHHHCCCCEECCCCEECCCCHHHHHHHHCCCCHHHHHEEEHHCCCCCCC
ETDLHGANLNDAYLSLADLSRANLSNATLRMADLSGANLQEVNLCHAVVVQADLKYAKLK
CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHCC
HCRIYGISAWGVEINEYTEQRDLIITPINQSSITVDNLEVAQFIDLLLNNVKIRHIIDAI
EEEEEEEEEECEEHHHHCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCHHHHHHHHH
TSKVVLILGRFSKERKTVLDALREELYRRDLTPIILDFEKPASRDITDTVETIARMSKFV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHE
IADLTDPSSIPHELTAIVPLLRKTPVIPLRHVGSGDYSMFDELKNYSWVLKIHEYDDAGS
EEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCEEEEEEEECCCCCC
LRSNLPMVIAPADQMAEKLRK
HHHCCCEEEECHHHHHHHHCC
>Mature Secondary Structure
MWIHANIWIRRLDIGSLYMETEKLLKILREGPEIWNQLRSENPQPFIDLSGTNLSGTNLN
CEEEEEEEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCE
RVNLSGTSLRKADLCKAYLNGANLSKADLNGANLEKAELIGANLSKANLKKADLSGADLD
EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
GANLSGANLWMADLIGTNLWKANLQGVNLGGANLRKACLSGADLREAYLFKANLWKASLH
CCCCCCCHHHHHHHHCCCCEECCCCEECCCCHHHHHHHHCCCCHHHHHEEEHHCCCCCCC
ETDLHGANLNDAYLSLADLSRANLSNATLRMADLSGANLQEVNLCHAVVVQADLKYAKLK
CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHCC
HCRIYGISAWGVEINEYTEQRDLIITPINQSSITVDNLEVAQFIDLLLNNVKIRHIIDAI
EEEEEEEEEECEEHHHHCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCHHHHHHHHH
TSKVVLILGRFSKERKTVLDALREELYRRDLTPIILDFEKPASRDITDTVETIARMSKFV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHE
IADLTDPSSIPHELTAIVPLLRKTPVIPLRHVGSGDYSMFDELKNYSWVLKIHEYDDAGS
EEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCEEEEEEEECCCCCC
LRSNLPMVIAPADQMAEKLRK
HHHCCCEEEECHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA