| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is lptD [H]
Identifier: 85858178
GI number: 85858178
Start: 331309
End: 333615
Strand: Direct
Name: lptD [H]
Synonym: SYN_01607
Alternate gene names: 85858178
Gene position: 331309-333615 (Clockwise)
Preceding gene: 85858177
Following gene: 85858180
Centisome position: 10.42
GC content: 49.07
Gene sequence:
>2307_bases ATGCAGAAAATCTTCATGCTGCATGCAAGCACGGCATTTCTCCCGCTGTTGCAAGCTGAAATTGGATTGTTGCCAGAGGT GATGATGAACCGAAAAAATTCATTATACGAGGAAGTGGGGATAAAGTCCATCCTTCGCCCTGAAGGACCGAGAAGCTGGA TCTCTTATATCGTTATGTTTTTTTTTGTTGTTCTTTTATTCCCTGCCGACGCCCTTACGGCAGAACCCCGAAAGATCCAG GGGCCTGTCGACATTGAAGCGGATACACTGGATTATGTAAAGGACACCGATACGTATCATGCCCGGGGAAACGTGATCAT CAGGTTTTCCGAAGGGGTTCTCACGGCGGACAGTGTCGCGTTGAACAAGTCGACCAATGAAGCTCTGGCTGAAGGGCATG TCTCATTGAAAAGTGGCGGGGATATACTTGAAGGGGATATCCTCACATTCAATATCGAGACAAAAAGCGGTGCCGCTGAA AACGCCCGGATTTTCATGGTGCGGAACCACGTGTATTTGAAGGGCAGCCGTATCGAAAAGGAGGGGGAGGCGCGCTACCG GGTTTTTGATGCCACGGCCACAACCTGCGATGGGGCAATTCCGGACTGGAGCTTTTCCGGAAAGGAACTGGATGTGACCA TCGACGGTTACGGGACGGTGAAACATGGCAAATTCAATATTCGAAATTTTCCGGTTTTTTATACACCCTATCTGATTTTT CCAGCCAAAACGACCCGGCAATCCGGTTTTCTGCTTCCCACCCTGGCCTATTCACGGGATAAGCATGGGGTGGATATTGA ACTCCCTTTCTTCTGGGCCATCTCCCCGAACCTTGACGCAACCTTTTACTCGCGTTACATGGAAGAACGGGGGTTCATGG AAGGCCTGGAGATCCGTTATTTTATCAGTCCGGATTCCTATGGAACATTTTATGCGGACTACCTCAACGATAACAAAAAC GTGACGGAGACTTTAGGCGCCATCAGCAGGGACTGGCAATCCGATCGGCAGCGGGGTTCATTCTATCTGAACCACGAGAC CACGTTCAGCTCTGGGTTTTACCTGCGCAGTGATATCTATAAAGTTTCCGATAGCTGGTATTTCAAGGACTTTTCCTCCA AGAATTACTATCGGGACCATTATTCCACGGACCCGACGCAGCGCTTCAAGCGGATCTCTTTTCAGGCCGACGAGTCTCTG AACTCTCTGGATTCCACAGTGAGGCTGGTCAAGGATGCGGAACTTTACAATATCACAGCCCTGGCGCGCTATACGGATGA TTTCACAAGTCCATCGAATGACCAGACATTGCAGAAATATCCGGAAATATCTCTTTTTACAGTAAAAAGACCTCTTCTGG GAACGCCGCTTCATGGAATGATCAATGGGACCTATGATTATTTCTATCGAAATGAAGGGCAGAAAGGCCACATGTATGAC ATTCAGCCCCTTGTCTCACTCCCTGTCCGCTTGGGACACTATGCCCGTTTTGTCCCGGAATTCAGTGTCCGGGAGACTAT ATGGGATCGTGATGACGACGAGTCAGGGACGATGCCCGGGGTAAGCCATCGCGGAGACCGGCAGGTTTATACGGCGAGCG CTGTCCTGAATACGGAATTTCACCGGATTTATGCCATCGGGGGAAAGCAGTTCGACAAAATCAGGCACGTGATCAAGCCG GAGTTGACCTACACTTATATTCCTGATCCCAGTCAGGACGATATCCCGGATTACGTGACCCCGATTGATGAAACCAATAG TCTGACCTATGCCCTGACCAATACCTTGACGGCGAAAATGCGGGAAAAGGACGGTTCAAGCAGTTACCGGGAAATTGTGC GGTTTAAATTGTTTCAGACCTATGATATTCGCGAGGCGCGGAGATCCGTTCAGGCTGATGAACCTGACAGCGAACCCTTC AGGGATCTCAATATGGAACTCTTTATCGATCCCTTTTCCTATCTCTCCTTCGCAGCCCGCAACAAACTGGATGTAAACAG CGGTGACTGGCTGCAAACCAATTATGATCTTGTCCTGAGAGACTGGCGGGGAGATTCGGCTACCCTGCAGTATCGTTATA CGCAGGATTCGATAGAGGAAATCAATCTCAATTTGAATGCGAAGTTGACCAGCCAACTGGATGCCCTGTTCATATTGAGG AGGAATGAACTGGAAGAAAAAAATCTGGAAAGAACTTATTTGCTGAAATATCACAGGCAGTGCTGGGGCGTTGATTTCGG CTATTCCGACGGGGACAACGACCGGCGTTTCGTGGTGTCCTTTTCACTTTATGGAATGGGAATATAG
Upstream 100 bases:
>100_bases AGCTGTGAAGCGTTGCAGCGGGCATTATGCCTTACCGGTAAAAATGATATGATCTGTATTACCGGTTCGCTTTATCTTGT CGGTGAAATAAAAAAAAGGT
Downstream 100 bases:
>100_bases GAGGGGATGAACATTAAGGAGACCGGAACGGGCATAGAAAAGTGCCGTTCGCAGAATGGAATTCCAGCCCTGTTCATAGA AATTATGAACGGATCCGGTT
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 768; Mature: 768
Protein sequence:
>768_residues MQKIFMLHASTAFLPLLQAEIGLLPEVMMNRKNSLYEEVGIKSILRPEGPRSWISYIVMFFFVVLLFPADALTAEPRKIQ GPVDIEADTLDYVKDTDTYHARGNVIIRFSEGVLTADSVALNKSTNEALAEGHVSLKSGGDILEGDILTFNIETKSGAAE NARIFMVRNHVYLKGSRIEKEGEARYRVFDATATTCDGAIPDWSFSGKELDVTIDGYGTVKHGKFNIRNFPVFYTPYLIF PAKTTRQSGFLLPTLAYSRDKHGVDIELPFFWAISPNLDATFYSRYMEERGFMEGLEIRYFISPDSYGTFYADYLNDNKN VTETLGAISRDWQSDRQRGSFYLNHETTFSSGFYLRSDIYKVSDSWYFKDFSSKNYYRDHYSTDPTQRFKRISFQADESL NSLDSTVRLVKDAELYNITALARYTDDFTSPSNDQTLQKYPEISLFTVKRPLLGTPLHGMINGTYDYFYRNEGQKGHMYD IQPLVSLPVRLGHYARFVPEFSVRETIWDRDDDESGTMPGVSHRGDRQVYTASAVLNTEFHRIYAIGGKQFDKIRHVIKP ELTYTYIPDPSQDDIPDYVTPIDETNSLTYALTNTLTAKMREKDGSSSYREIVRFKLFQTYDIREARRSVQADEPDSEPF RDLNMELFIDPFSYLSFAARNKLDVNSGDWLQTNYDLVLRDWRGDSATLQYRYTQDSIEEINLNLNAKLTSQLDALFILR RNELEEKNLERTYLLKYHRQCWGVDFGYSDGDNDRRFVVSFSLYGMGI
Sequences:
>Translated_768_residues MQKIFMLHASTAFLPLLQAEIGLLPEVMMNRKNSLYEEVGIKSILRPEGPRSWISYIVMFFFVVLLFPADALTAEPRKIQ GPVDIEADTLDYVKDTDTYHARGNVIIRFSEGVLTADSVALNKSTNEALAEGHVSLKSGGDILEGDILTFNIETKSGAAE NARIFMVRNHVYLKGSRIEKEGEARYRVFDATATTCDGAIPDWSFSGKELDVTIDGYGTVKHGKFNIRNFPVFYTPYLIF PAKTTRQSGFLLPTLAYSRDKHGVDIELPFFWAISPNLDATFYSRYMEERGFMEGLEIRYFISPDSYGTFYADYLNDNKN VTETLGAISRDWQSDRQRGSFYLNHETTFSSGFYLRSDIYKVSDSWYFKDFSSKNYYRDHYSTDPTQRFKRISFQADESL NSLDSTVRLVKDAELYNITALARYTDDFTSPSNDQTLQKYPEISLFTVKRPLLGTPLHGMINGTYDYFYRNEGQKGHMYD IQPLVSLPVRLGHYARFVPEFSVRETIWDRDDDESGTMPGVSHRGDRQVYTASAVLNTEFHRIYAIGGKQFDKIRHVIKP ELTYTYIPDPSQDDIPDYVTPIDETNSLTYALTNTLTAKMREKDGSSSYREIVRFKLFQTYDIREARRSVQADEPDSEPF RDLNMELFIDPFSYLSFAARNKLDVNSGDWLQTNYDLVLRDWRGDSATLQYRYTQDSIEEINLNLNAKLTSQLDALFILR RNELEEKNLERTYLLKYHRQCWGVDFGYSDGDNDRRFVVSFSLYGMGI >Mature_768_residues MQKIFMLHASTAFLPLLQAEIGLLPEVMMNRKNSLYEEVGIKSILRPEGPRSWISYIVMFFFVVLLFPADALTAEPRKIQ GPVDIEADTLDYVKDTDTYHARGNVIIRFSEGVLTADSVALNKSTNEALAEGHVSLKSGGDILEGDILTFNIETKSGAAE NARIFMVRNHVYLKGSRIEKEGEARYRVFDATATTCDGAIPDWSFSGKELDVTIDGYGTVKHGKFNIRNFPVFYTPYLIF PAKTTRQSGFLLPTLAYSRDKHGVDIELPFFWAISPNLDATFYSRYMEERGFMEGLEIRYFISPDSYGTFYADYLNDNKN VTETLGAISRDWQSDRQRGSFYLNHETTFSSGFYLRSDIYKVSDSWYFKDFSSKNYYRDHYSTDPTQRFKRISFQADESL NSLDSTVRLVKDAELYNITALARYTDDFTSPSNDQTLQKYPEISLFTVKRPLLGTPLHGMINGTYDYFYRNEGQKGHMYD IQPLVSLPVRLGHYARFVPEFSVRETIWDRDDDESGTMPGVSHRGDRQVYTASAVLNTEFHRIYAIGGKQFDKIRHVIKP ELTYTYIPDPSQDDIPDYVTPIDETNSLTYALTNTLTAKMREKDGSSSYREIVRFKLFQTYDIREARRSVQADEPDSEPF RDLNMELFIDPFSYLSFAARNKLDVNSGDWLQTNYDLVLRDWRGDSATLQYRYTQDSIEEINLNLNAKLTSQLDALFILR RNELEEKNLERTYLLKYHRQCWGVDFGYSDGDNDRRFVVSFSLYGMGI
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Outer Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=308, Percent_Identity=30.5194805194805, Blast_Score=103, Evalue=3e-23,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 88580; Mature: 88580
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKIFMLHASTAFLPLLQAEIGLLPEVMMNRKNSLYEEVGIKSILRPEGPRSWISYIVMF CCEEEEEECCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHCHHHHHCCCCHHHHHHHHHHH FFVVLLFPADALTAEPRKIQGPVDIEADTLDYVKDTDTYHARGNVIIRFSEGVLTADSVA HHHHHHHCCHHHCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCEEEEECCCEEEECCEE LNKSTNEALAEGHVSLKSGGDILEGDILTFNIETKSGAAENARIFMVRNHVYLKGSRIEK ECCCCCHHHHHCCEEECCCCCEEECCEEEEEEECCCCCCCCCEEEEEECEEEEECCCCCC EGEARYRVFDATATTCDGAIPDWSFSGKELDVTIDGYGTVKHGKFNIRNFPVFYTPYLIF CCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCEEECCCCCEEECCEEEE PAKTTRQSGFLLPTLAYSRDKHGVDIELPFFWAISPNLDATFYSRYMEERGFMEGLEIRY ECCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE FISPDSYGTFYADYLNDNKNVTETLGAISRDWQSDRQRGSFYLNHETTFSSGFYLRSDIY EECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCEEEECCEE KVSDSWYFKDFSSKNYYRDHYSTDPTQRFKRISFQADESLNSLDSTVRLVKDAELYNITA EECCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEE LARYTDDFTSPSNDQTLQKYPEISLFTVKRPLLGTPLHGMINGTYDYFYRNEGQKGHMYD EEEECCCCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCEECCEEEEEECCCCCCCCEEE IQPLVSLPVRLGHYARFVPEFSVRETIWDRDDDESGTMPGVSHRGDRQVYTASAVLNTEF CCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCE HRIYAIGGKQFDKIRHVIKPELTYTYIPDPSQDDIPDYVTPIDETNSLTYALTNTLTAKM EEEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHH REKDGSSSYREIVRFKLFQTYDIREARRSVQADEPDSEPFRDLNMELFIDPFSYLSFAAR HCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHCCCEEEEECHHHHHHHHHC NKLDVNSGDWLQTNYDLVLRDWRGDSATLQYRYTQDSIEEINLNLNAKLTSQLDALFILR CCCCCCCCCEEEECCEEEEEECCCCCEEEEEEECCCCHHHEEEEECEEEHHCHHEEEEEE RNELEEKNLERTYLLKYHRQCWGVDFGYSDGDNDRRFVVSFSLYGMGI CCCCCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCC >Mature Secondary Structure MQKIFMLHASTAFLPLLQAEIGLLPEVMMNRKNSLYEEVGIKSILRPEGPRSWISYIVMF CCEEEEEECCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHCHHHHHCCCCHHHHHHHHHHH FFVVLLFPADALTAEPRKIQGPVDIEADTLDYVKDTDTYHARGNVIIRFSEGVLTADSVA HHHHHHHCCHHHCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCEEEEECCCEEEECCEE LNKSTNEALAEGHVSLKSGGDILEGDILTFNIETKSGAAENARIFMVRNHVYLKGSRIEK ECCCCCHHHHHCCEEECCCCCEEECCEEEEEEECCCCCCCCCEEEEEECEEEEECCCCCC EGEARYRVFDATATTCDGAIPDWSFSGKELDVTIDGYGTVKHGKFNIRNFPVFYTPYLIF CCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCEEECCCCCEEECCEEEE PAKTTRQSGFLLPTLAYSRDKHGVDIELPFFWAISPNLDATFYSRYMEERGFMEGLEIRY ECCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE FISPDSYGTFYADYLNDNKNVTETLGAISRDWQSDRQRGSFYLNHETTFSSGFYLRSDIY EECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCEEEECCEE KVSDSWYFKDFSSKNYYRDHYSTDPTQRFKRISFQADESLNSLDSTVRLVKDAELYNITA EECCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEE LARYTDDFTSPSNDQTLQKYPEISLFTVKRPLLGTPLHGMINGTYDYFYRNEGQKGHMYD EEEECCCCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCEECCEEEEEECCCCCCCCEEE IQPLVSLPVRLGHYARFVPEFSVRETIWDRDDDESGTMPGVSHRGDRQVYTASAVLNTEF CCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCE HRIYAIGGKQFDKIRHVIKPELTYTYIPDPSQDDIPDYVTPIDETNSLTYALTNTLTAKM EEEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHH REKDGSSSYREIVRFKLFQTYDIREARRSVQADEPDSEPFRDLNMELFIDPFSYLSFAAR HCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHCCCEEEEECHHHHHHHHHC NKLDVNSGDWLQTNYDLVLRDWRGDSATLQYRYTQDSIEEINLNLNAKLTSQLDALFILR CCCCCCCCCEEEECCEEEEEECCCCCEEEEEEECCCCHHHEEEEECEEEHHCHHEEEEEE RNELEEKNLERTYLLKYHRQCWGVDFGYSDGDNDRRFVVSFSLYGMGI CCCCCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA