| Definition | Erythrobacter litoralis HTCC2594 chromosome, complete genome. |
|---|---|
| Accession | NC_007722 |
| Length | 3,052,398 |
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The map label for this gene is gyrB [H]
Identifier: 85375173
GI number: 85375173
Start: 2361415
End: 2363958
Strand: Direct
Name: gyrB [H]
Synonym: ELI_11730
Alternate gene names: 85375173
Gene position: 2361415-2363958 (Clockwise)
Preceding gene: 85375172
Following gene: 85375174
Centisome position: 77.36
GC content: 62.66
Gene sequence:
>2544_bases ATGAGCCAAGAGACCCCGGATACTCCCGAAGCAATTCCTGAAAAAGTCCGTCAGAACGGCGAATACGGCGCGGATTCGAT CAAGGTCCTCAAGGGCCTCGATGCGGTGCGCAAGCGCCCCGGCATGTATATCGGCGATACCGACGATGGATCGGGCCTGC ACCACATGGTGTTCGAAGTCTCCGACAATGCCATCGATGAGGCGCTGGCGGGGCATTGCGATCTCGTTTTGATCGAATTG AACCCCGATGGTTCGGTTTCGGTCGAGGACAATGGCCGCGGCATTCCGGTCGACATGCACAAGGAAGAGGGCGTGTCGGC GGCGGAAGTCATCATGACCCAGCTGCATGCGGGCGGGAAGTTCGAAAACACGTCCGATGACAACGCCTACAAGGTTTCGG GCGGCTTGCACGGCGTCGGTGTGTCGGTGGTCAACGCGCTGTCGGAGTGGCTCGAACTCGTAATCTGGCGCGACGGCAAA GAGCATTACATGCGCTTCGAGCATGGCGAAGCGGTCAAGAGCCTAGAAGTCACAGGCGACGCGCCCAGGGTCGATCAGAA CCCGGACGACAATGGCTTCAAGAAGGGCACCCGTGTCACCTTCATGGCAAGCCACGATACCTTCAAGAACGTGACCGACT TCGATTTCGAGAAACTCGAACACCGCTATCGCGAACTGGCATTCCTCAATTCGGGCGTCCGTATCCTGCTGCGCGACAAG CGGCACGAGGACGTGCGCGAGCACGACATGTTCTACGAAGGCGGCATCGCGGCCTTCGTGAAATATCTCGACCGCAACAA GCAGCCGCTGGTGGCCGAGCCGATCTCGGTTTCGGCGGAAAAGGACGGCATCGGCATCGACGTCGCGCTGCAGTGGAACG ACAGCTATTACGAGAACGTCCTTACCTTCACCAACAACATCCCGCAGCGCGACGGCGGCACACACCTGGCCGCGTTTCGC TCGGCGCTGACGCGCACGCTCAACAACTACGCAACCGCAAGCGGGCTCCTGAAGAAGGAAAAGGTCAGCCTGTCCGGTGA GGACATGCGCGAAGGCCTGACCGCGATCGTCTCCGTCAAGCTTCCCGATCCCAAGTTCGGCAGCCAGACCAAGGACAAGC TGGTCAGTTCCGAAGTGCGCCAGCCGCTCGAAAGCCTGATGGGCGAGAAGATGGGCGAATGGCTGGAGGAAAACCCCAAC GACGCCAAGGCTATCGTCCAGAAGATCATCGATGCCGCCGCCGCGCGCGAGGCCGCGCGCAAGGCGCGTGAGATGAGCCG CAAGGGCGCGATGTCCGTCGCGTCGCTGCCCGGCAAGCTGGCCGATTGCCAGGAACGCGATCCGGCCAAGTCCGAACTGT TTCTGGTCGAGGGCGATTCCGCCGGCGGTTCGGCCAAGCAGGGCCGCGACCGCAAGACGCAGGCGATCCTGCCGTTGAAG GGCAAGATCCTCAATGTAGAGCGCGCGCGGTTCGACCGGATCATCTCATCCAAGGAAGTCGGCACCCTGATCCAGGCCAT GGGCACCGGCCTGCGCGACGAGTTCAACCTCGAAAAGCTGCGCTATCACAAGATCGTGATCATGACCGACGCCGATGTCG ACGGCGCGCATATCCGCACGCTGCTGCTCACTTTCTTCCACCGGCAGATGCCGGAAATCGTCAAGGCCGGGCACCTCTTC ATCGCCCAGCCGCCGCTTTACAAGGTCTCCAAGGGACGCAGCGAAGTCTATCTCAAGGACGATCGCGAGCTCGACCGCTA CCTGATTTCCGGCGGTTTGCAGGGCCGCGTGCTCGACAGCGGCGGCACGCAGCGCAGCGGGGCCGAGCTGCAAACGCTGG TCGACCATGCGCTGCGAGTGCGCAATCTGATCGGCTTCGCGCCGCGCAAATACAACGCCGCGATCATCGAAGCGATGGCA CTGGCCGGCGTGTTCGACCCTGCCAACCGCGCGTCGGCAGAGGCGCTGGAACGTGCGGCGGAGCGGCTGCAGCTGGGCGA TCCCGAAGCCGAATGGAGCGCGCGCCGGACCGACGATGGCGGGGTTGCCTTCGAGCGCGTATGGCGCGGCGTCACGGATG CGCACCTGATCGAACCGAAGTTCCTCGAAAGCGCGGAAGCGCGCAAGCTGCACAGCGTCGCTGCCGAAGAGGCCGAGAGC TACGAAGTTGCCGCCCGGCTGAAAAAACTGTCGAGCGGAGAGACCACCGCGCCGGATCCCGAAAGCGCCGACGAAACCGA TGCCGACACGCCGAGCTTCACCGATGACGATGCCATCACCCGGCCGACCGAATTGCTCGACGCGGTGCTCGCGGCAGGTC GCAAGGGCCTGTCGATCGCGCGCTACAAGGGCCTCGGCGAGATGAACGCAGAGCAATTGTGGGAGACGACGCTCGATCCC GAAGCACGCATCCTGCTGCAGGTGAAGGTCGAAGACGCCGACGTGACCGACGAAATCTTCACCCGCCTGATGGGCGATGT CGTCGAACCGCGGCGCGAGTTCATCCAGGACAATGCGCTCAACGTGGCGAACCTCGATGTTTAG
Upstream 100 bases:
>100_bases CCACAAAGCCTTCTAGGCCCTCCGGACCGGTGGTGGAAAAAGCGATGCCTGGCCCATCGCAAAGCTTGGGAATCCCCCAC CCGAAGCCTATATACTGGGC
Downstream 100 bases:
>100_bases CACATCGGAAGCCGTCGGTGCCCAGAACGTCGCCACCCTCGACGTGTAGGGATTTGAACGAACTGTGTTAGCCTCCTATA TCACCTGCAGAATGCAGATC
Product: type IIA topoisomeraseb subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 847; Mature: 846
Protein sequence:
>847_residues MSQETPDTPEAIPEKVRQNGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDLVLIEL NPDGSVSVEDNGRGIPVDMHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGK EHYMRFEHGEAVKSLEVTGDAPRVDQNPDDNGFKKGTRVTFMASHDTFKNVTDFDFEKLEHRYRELAFLNSGVRILLRDK RHEDVREHDMFYEGGIAAFVKYLDRNKQPLVAEPISVSAEKDGIGIDVALQWNDSYYENVLTFTNNIPQRDGGTHLAAFR SALTRTLNNYATASGLLKKEKVSLSGEDMREGLTAIVSVKLPDPKFGSQTKDKLVSSEVRQPLESLMGEKMGEWLEENPN DAKAIVQKIIDAAAAREAARKAREMSRKGAMSVASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRKTQAILPLK GKILNVERARFDRIISSKEVGTLIQAMGTGLRDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQMPEIVKAGHLF IAQPPLYKVSKGRSEVYLKDDRELDRYLISGGLQGRVLDSGGTQRSGAELQTLVDHALRVRNLIGFAPRKYNAAIIEAMA LAGVFDPANRASAEALERAAERLQLGDPEAEWSARRTDDGGVAFERVWRGVTDAHLIEPKFLESAEARKLHSVAAEEAES YEVAARLKKLSSGETTAPDPESADETDADTPSFTDDDAITRPTELLDAVLAAGRKGLSIARYKGLGEMNAEQLWETTLDP EARILLQVKVEDADVTDEIFTRLMGDVVEPRREFIQDNALNVANLDV
Sequences:
>Translated_847_residues MSQETPDTPEAIPEKVRQNGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDLVLIEL NPDGSVSVEDNGRGIPVDMHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGK EHYMRFEHGEAVKSLEVTGDAPRVDQNPDDNGFKKGTRVTFMASHDTFKNVTDFDFEKLEHRYRELAFLNSGVRILLRDK RHEDVREHDMFYEGGIAAFVKYLDRNKQPLVAEPISVSAEKDGIGIDVALQWNDSYYENVLTFTNNIPQRDGGTHLAAFR SALTRTLNNYATASGLLKKEKVSLSGEDMREGLTAIVSVKLPDPKFGSQTKDKLVSSEVRQPLESLMGEKMGEWLEENPN DAKAIVQKIIDAAAAREAARKAREMSRKGAMSVASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRKTQAILPLK GKILNVERARFDRIISSKEVGTLIQAMGTGLRDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQMPEIVKAGHLF IAQPPLYKVSKGRSEVYLKDDRELDRYLISGGLQGRVLDSGGTQRSGAELQTLVDHALRVRNLIGFAPRKYNAAIIEAMA LAGVFDPANRASAEALERAAERLQLGDPEAEWSARRTDDGGVAFERVWRGVTDAHLIEPKFLESAEARKLHSVAAEEAES YEVAARLKKLSSGETTAPDPESADETDADTPSFTDDDAITRPTELLDAVLAAGRKGLSIARYKGLGEMNAEQLWETTLDP EARILLQVKVEDADVTDEIFTRLMGDVVEPRREFIQDNALNVANLDV >Mature_846_residues SQETPDTPEAIPEKVRQNGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDLVLIELN PDGSVSVEDNGRGIPVDMHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGKE HYMRFEHGEAVKSLEVTGDAPRVDQNPDDNGFKKGTRVTFMASHDTFKNVTDFDFEKLEHRYRELAFLNSGVRILLRDKR HEDVREHDMFYEGGIAAFVKYLDRNKQPLVAEPISVSAEKDGIGIDVALQWNDSYYENVLTFTNNIPQRDGGTHLAAFRS ALTRTLNNYATASGLLKKEKVSLSGEDMREGLTAIVSVKLPDPKFGSQTKDKLVSSEVRQPLESLMGEKMGEWLEENPND AKAIVQKIIDAAAAREAARKAREMSRKGAMSVASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRKTQAILPLKG KILNVERARFDRIISSKEVGTLIQAMGTGLRDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQMPEIVKAGHLFI AQPPLYKVSKGRSEVYLKDDRELDRYLISGGLQGRVLDSGGTQRSGAELQTLVDHALRVRNLIGFAPRKYNAAIIEAMAL AGVFDPANRASAEALERAAERLQLGDPEAEWSARRTDDGGVAFERVWRGVTDAHLIEPKFLESAEARKLHSVAAEEAESY EVAARLKKLSSGETTAPDPESADETDADTPSFTDDDAITRPTELLDAVLAAGRKGLSIARYKGLGEMNAEQLWETTLDPE ARILLQVKVEDADVTDEIFTRLMGDVVEPRREFIQDNALNVANLDV
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the type II topoisomerase family [H]
Homologues:
Organism=Homo sapiens, GI19913408, Length=577, Percent_Identity=24.9566724436742, Blast_Score=142, Evalue=2e-33, Organism=Homo sapiens, GI19913406, Length=567, Percent_Identity=25.2204585537919, Blast_Score=135, Evalue=2e-31, Organism=Escherichia coli, GI48994957, Length=840, Percent_Identity=56.547619047619, Blast_Score=862, Evalue=0.0, Organism=Escherichia coli, GI1789408, Length=557, Percent_Identity=40.394973070018, Blast_Score=376, Evalue=1e-105, Organism=Caenorhabditis elegans, GI17535065, Length=552, Percent_Identity=24.2753623188406, Blast_Score=132, Evalue=1e-30, Organism=Caenorhabditis elegans, GI212645845, Length=515, Percent_Identity=23.8834951456311, Blast_Score=115, Evalue=1e-25, Organism=Caenorhabditis elegans, GI212645657, Length=144, Percent_Identity=32.6388888888889, Blast_Score=76, Evalue=8e-14, Organism=Saccharomyces cerevisiae, GI6324241, Length=604, Percent_Identity=24.0066225165563, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI17136538, Length=544, Percent_Identity=27.5735294117647, Blast_Score=146, Evalue=6e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011557 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 [H]
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 93416; Mature: 93285
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: PS00177 TOPOISOMERASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQETPDTPEAIPEKVRQNGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEV CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEE SDNAIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPVDMHKEEGVSAAEVIMTQLHAGGK CCHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCC FENTSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGKEHYMRFEHGEAVKSLEVTGD CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHEEEECCC APRVDQNPDDNGFKKGTRVTFMASHDTFKNVTDFDFEKLEHRYRELAFLNSGVRILLRDK CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC RHEDVREHDMFYEGGIAAFVKYLDRNKQPLVAEPISVSAEKDGIGIDVALQWNDSYYENV CHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCEEEEEEEECCHHHHHH LTFTNNIPQRDGGTHLAAFRSALTRTLNNYATASGLLKKEKVSLSGEDMREGLTAIVSVK HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEEE LPDPKFGSQTKDKLVSSEVRQPLESLMGEKMGEWLEENPNDAKAIVQKIIDAAAAREAAR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH KAREMSRKGAMSVASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRKTQAILPLK HHHHHHHHCCCHHHHCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCC GKILNVERARFDRIISSKEVGTLIQAMGTGLRDEFNLEKLRYHKIVIMTDADVDGAHIRT CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEEEECCCCCHHHHHH LLLTFFHRQMPEIVKAGHLFIAQPPLYKVSKGRSEVYLKDDRELDRYLISGGLQGRVLDS HHHHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEECC GGTQRSGAELQTLVDHALRVRNLIGFAPRKYNAAIIEAMALAGVFDPANRASAEALERAA CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH ERLQLGDPEAEWSARRTDDGGVAFERVWRGVTDAHLIEPKFLESAEARKLHSVAAEEAES HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH YEVAARLKKLSSGETTAPDPESADETDADTPSFTDDDAITRPTELLDAVLAAGRKGLSIA HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEH RYKGLGEMNAEQLWETTLDPEARILLQVKVEDADVTDEIFTRLMGDVVEPRREFIQDNAL HHCCCCCCCHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC NVANLDV CEECCCC >Mature Secondary Structure SQETPDTPEAIPEKVRQNGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEV CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEE SDNAIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPVDMHKEEGVSAAEVIMTQLHAGGK CCHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCC FENTSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGKEHYMRFEHGEAVKSLEVTGD CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHEEEECCC APRVDQNPDDNGFKKGTRVTFMASHDTFKNVTDFDFEKLEHRYRELAFLNSGVRILLRDK CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC RHEDVREHDMFYEGGIAAFVKYLDRNKQPLVAEPISVSAEKDGIGIDVALQWNDSYYENV CHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCEEEEEEEECCHHHHHH LTFTNNIPQRDGGTHLAAFRSALTRTLNNYATASGLLKKEKVSLSGEDMREGLTAIVSVK HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEEE LPDPKFGSQTKDKLVSSEVRQPLESLMGEKMGEWLEENPNDAKAIVQKIIDAAAAREAAR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH KAREMSRKGAMSVASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRKTQAILPLK HHHHHHHHCCCHHHHCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCC GKILNVERARFDRIISSKEVGTLIQAMGTGLRDEFNLEKLRYHKIVIMTDADVDGAHIRT CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEEEECCCCCHHHHHH LLLTFFHRQMPEIVKAGHLFIAQPPLYKVSKGRSEVYLKDDRELDRYLISGGLQGRVLDS HHHHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEECC GGTQRSGAELQTLVDHALRVRNLIGFAPRKYNAAIIEAMALAGVFDPANRASAEALERAA CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH ERLQLGDPEAEWSARRTDDGGVAFERVWRGVTDAHLIEPKFLESAEARKLHSVAAEEAES HHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH YEVAARLKKLSSGETTAPDPESADETDADTPSFTDDDAITRPTELLDAVLAAGRKGLSIA HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEH RYKGLGEMNAEQLWETTLDPEARILLQVKVEDADVTDEIFTRLMGDVVEPRREFIQDNAL HHCCCCCCCHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC NVANLDV CEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226640 [H]