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The map label for this gene is yagA [H]

Identifier: 85374959

GI number: 85374959

Start: 2159454

End: 2160434

Strand: Reverse

Name: yagA [H]

Synonym: ELI_10660

Alternate gene names: 85374959

Gene position: 2160434-2159454 (Counterclockwise)

Preceding gene: 85374960

Following gene: 85374957

Centisome position: 70.78

GC content: 61.47

Gene sequence:

>981_bases
ATGAGGTATCCCGCATCCGAGAAGCTCGAGATCATCCGGATCGTCGAGCAGTCGCATCTGCCCGCCAAACGCACGCTGGA
CCAACTCGGTGTGGCACGGCGAACCTTCTACCGCTGGTATGACCGTTACCTCGAAGGCGGGCCGGAGGCGCTCCAGGACC
GCCCTTCAGCGCCGAGCCGGGTGTGGAACCGCATCGGCGAGGATATCCAGGACCAGATCGTCGAGATGGCGCTGGAGCAG
ACCGATCTGTCCCCGCGCGAGCTGGCGGTGCGCTTCACCGACGAGCGGCGCTACTTCGTGTCGGAAGCCACGGTTTACCG
GCTGCTCAGGGCTCATGATCTGATCACCAGCCCGGCCTACACCGTGATCAAGGCGGCAGATGCGTTCCACACACAAACCT
CCCGCCCCAACGAGATGTGGCAGACCGACTTTACCTACTTCAAGATCATCGGATGGGGCTGGGTCTATCTATCGACCGTG
CTCGATGATTACTCGCGCTACATCATTGCATGGAAGCTCTGCACCACCATGCGGGCCGAGGACGTCACCGAGACGCTGGA
CATGGCGCTGGCAGCCTCAGGCTGCGACCACGCCAACGTGCTGCACAGGCCCCGCCTTCTCAGCGACAACGGCCCCAGCT
ACATCGCCGGAGAACTGGCCGAATACATCGAAGCGAACCAGATGAGCCATGTGCGGGGCGCCCCCTTCCATCCGCAAACC
CAAGGCAAGATCGAGCGCTGGCACCAGACCCTGAAGAACCGCGTGCTGCTAGAGAACTACTTCCTGCCCGGCGATCTCCA
CCAGCAGATCGAGGCCTTCGTCGAGCATTACAACCACTGCCGATACCACGAGAGCCTCGACAATGTGACACCTGCCGATA
CCTACTTCGGCAGGGCTCCTGCCATCATCAAACGAAGAGAAAGGATCAAGCGAAAGACACTCGAACATCGGCGCTTGCAA
CACCGCAGGCTCGCCGCCTAG

Upstream 100 bases:

>100_bases
TGCGGCGAGAAGCTCGCGATCTCAAGGAATGCGTGGCCGACCTCACCCTGGAAAACCGCCTGCTCAAAAAAAGCATGATC
GCGGATGGGGGAGACGACGA

Downstream 100 bases:

>100_bases
CATCAAACCTCAGACGAGGCCCGCACTCCGCAAACCTACGCCGCGAGTTGTGCCAAATGTTCTGACGACGGACACATCCG
ACAAGGAGCGACTTGGGAGC

Product: ISCc3, transposase OrfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MRYPASEKLEIIRIVEQSHLPAKRTLDQLGVARRTFYRWYDRYLEGGPEALQDRPSAPSRVWNRIGEDIQDQIVEMALEQ
TDLSPRELAVRFTDERRYFVSEATVYRLLRAHDLITSPAYTVIKAADAFHTQTSRPNEMWQTDFTYFKIIGWGWVYLSTV
LDDYSRYIIAWKLCTTMRAEDVTETLDMALAASGCDHANVLHRPRLLSDNGPSYIAGELAEYIEANQMSHVRGAPFHPQT
QGKIERWHQTLKNRVLLENYFLPGDLHQQIEAFVEHYNHCRYHESLDNVTPADTYFGRAPAIIKRRERIKRKTLEHRRLQ
HRRLAA

Sequences:

>Translated_326_residues
MRYPASEKLEIIRIVEQSHLPAKRTLDQLGVARRTFYRWYDRYLEGGPEALQDRPSAPSRVWNRIGEDIQDQIVEMALEQ
TDLSPRELAVRFTDERRYFVSEATVYRLLRAHDLITSPAYTVIKAADAFHTQTSRPNEMWQTDFTYFKIIGWGWVYLSTV
LDDYSRYIIAWKLCTTMRAEDVTETLDMALAASGCDHANVLHRPRLLSDNGPSYIAGELAEYIEANQMSHVRGAPFHPQT
QGKIERWHQTLKNRVLLENYFLPGDLHQQIEAFVEHYNHCRYHESLDNVTPADTYFGRAPAIIKRRERIKRKTLEHRRLQ
HRRLAA
>Mature_326_residues
MRYPASEKLEIIRIVEQSHLPAKRTLDQLGVARRTFYRWYDRYLEGGPEALQDRPSAPSRVWNRIGEDIQDQIVEMALEQ
TDLSPRELAVRFTDERRYFVSEATVYRLLRAHDLITSPAYTVIKAADAFHTQTSRPNEMWQTDFTYFKIIGWGWVYLSTV
LDDYSRYIIAWKLCTTMRAEDVTETLDMALAASGCDHANVLHRPRLLSDNGPSYIAGELAEYIEANQMSHVRGAPFHPQT
QGKIERWHQTLKNRVLLENYFLPGDLHQQIEAFVEHYNHCRYHESLDNVTPADTYFGRAPAIIKRRERIKRKTLEHRRLQ
HRRLAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=292, Percent_Identity=29.4520547945205, Blast_Score=114, Evalue=7e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 38231; Mature: 38231

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYPASEKLEIIRIVEQSHLPAKRTLDQLGVARRTFYRWYDRYLEGGPEALQDRPSAPSR
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHH
VWNRIGEDIQDQIVEMALEQTDLSPRELAVRFTDERRYFVSEATVYRLLRAHDLITSPAY
HHHHHCHHHHHHHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHH
TVIKAADAFHTQTSRPNEMWQTDFTYFKIIGWGWVYLSTVLDDYSRYIIAWKLCTTMRAE
HHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVTETLDMALAASGCDHANVLHRPRLLSDNGPSYIAGELAEYIEANQMSHVRGAPFHPQT
HHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
QGKIERWHQTLKNRVLLENYFLPGDLHQQIEAFVEHYNHCRYHESLDNVTPADTYFGRAP
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCH
AIIKRRERIKRKTLEHRRLQHRRLAA
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRYPASEKLEIIRIVEQSHLPAKRTLDQLGVARRTFYRWYDRYLEGGPEALQDRPSAPSR
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHH
VWNRIGEDIQDQIVEMALEQTDLSPRELAVRFTDERRYFVSEATVYRLLRAHDLITSPAY
HHHHHCHHHHHHHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHH
TVIKAADAFHTQTSRPNEMWQTDFTYFKIIGWGWVYLSTVLDDYSRYIIAWKLCTTMRAE
HHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVTETLDMALAASGCDHANVLHRPRLLSDNGPSYIAGELAEYIEANQMSHVRGAPFHPQT
HHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
QGKIERWHQTLKNRVLLENYFLPGDLHQQIEAFVEHYNHCRYHESLDNVTPADTYFGRAP
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCH
AIIKRRERIKRKTLEHRRLQHRRLAA
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]