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The map label for this gene is dapD

Identifier: 85374755

GI number: 85374755

Start: 1966495

End: 1967316

Strand: Direct

Name: dapD

Synonym: ELI_09640

Alternate gene names: 85374755

Gene position: 1966495-1967316 (Clockwise)

Preceding gene: 85374753

Following gene: 85374756

Centisome position: 64.42

GC content: 65.09

Gene sequence:

>822_bases
ATGACCAGCGACCTCCAGGCCACCATCGAGAAAGCATGGGAGAACCGCACTGAAGTGACACCCGGGAGCCGCGAGGTTGC
CGAGGCGGTGGAGCAGGCGATCGCCATGATAGACGATGGCTCGGCGCGCGTCGCGCAGCCCGATGGGGCCGGCGGCTGGC
AAGTCAATCAGTGGCTCAAGAAGGCGGTACTGCTGTCCTTCCGCCTGCGCGAGAACGCAATAATGGAGGGCGCTGTCGCC
GCGCCCGCTTTCGACAAGGTGCCGAGCAAGTTCGAAGGCTGGGACGAAGCCCGTTTCAGGGAGGCAGGCTTCCGGGTGGT
ACCCGGCGCCATCGCCCGCCGCGGCAGCTACATCGGCAAGGGCGCGGTGTTGATGCCGAGCTTCGTCAACATCGGTGCCT
ATGTCGGCGAGGGTACGATGATCGACACCTGGGCCAGCGTCGGCAGCTGTGCGCAGGTCGGCACCAATTGCCACATCTCG
GCCGGGGCCGGCATCGGCGGCGTGCTGGAGCCGTTGCAGGCCAACCCCACCATCATCGGCGACAACTGCTTCATCGGTGC
GCGATCTGAGATCGTCGAGGGCGTGATCGTCGGCGAAGGAAGCGTCGTCGCCATGGGGGTCTTCATCACGCAGTCGACCA
AGATCGTATATCGCGATAGCGGCGAAGTTATCCGCGGGCAGATCCCGCCCTATTCGGTCGTCGTCCCGGGCACGCTTCCG
GATCCCAAGGGCGGCCCTTCGCTCGCCTGCGCCGTCATCGTCAAGACCGTGGATGCGCAGACCCGCGAAAAGACCGGCAT
CAACGATTTGCTGCGCGATTGA

Upstream 100 bases:

>100_bases
CTGAACGACCAGCATGAATTGCTTTGCCGCTTGCTTGCCCTCGCTGCTGGGCGCAGCTAGCAGCGCTGGCGACGGATCAC
CAACGAAAGCCTACTGCCCC

Downstream 100 bases:

>100_bases
GGAACGGCTGGCTTTCCCCGGCGTTTTGACACACATTACGAATACGACTTTCTCGGAGGGTAATTACATGTCCACGCAGG
ATCCGGACGGCACCATTCAC

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTSDLQATIEKAWENRTEVTPGSREVAEAVEQAIAMIDDGSARVAQPDGAGGWQVNQWLKKAVLLSFRLRENAIMEGAVA
APAFDKVPSKFEGWDEARFREAGFRVVPGAIARRGSYIGKGAVLMPSFVNIGAYVGEGTMIDTWASVGSCAQVGTNCHIS
AGAGIGGVLEPLQANPTIIGDNCFIGARSEIVEGVIVGEGSVVAMGVFITQSTKIVYRDSGEVIRGQIPPYSVVVPGTLP
DPKGGPSLACAVIVKTVDAQTREKTGINDLLRD

Sequences:

>Translated_273_residues
MTSDLQATIEKAWENRTEVTPGSREVAEAVEQAIAMIDDGSARVAQPDGAGGWQVNQWLKKAVLLSFRLRENAIMEGAVA
APAFDKVPSKFEGWDEARFREAGFRVVPGAIARRGSYIGKGAVLMPSFVNIGAYVGEGTMIDTWASVGSCAQVGTNCHIS
AGAGIGGVLEPLQANPTIIGDNCFIGARSEIVEGVIVGEGSVVAMGVFITQSTKIVYRDSGEVIRGQIPPYSVVVPGTLP
DPKGGPSLACAVIVKTVDAQTREKTGINDLLRD
>Mature_272_residues
TSDLQATIEKAWENRTEVTPGSREVAEAVEQAIAMIDDGSARVAQPDGAGGWQVNQWLKKAVLLSFRLRENAIMEGAVAA
PAFDKVPSKFEGWDEARFREAGFRVVPGAIARRGSYIGKGAVLMPSFVNIGAYVGEGTMIDTWASVGSCAQVGTNCHISA
GAGIGGVLEPLQANPTIIGDNCFIGARSEIVEGVIVGEGSVVAMGVFITQSTKIVYRDSGEVIRGQIPPYSVVVPGTLPD
PKGGPSLACAVIVKTVDAQTREKTGINDLLRD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=270, Percent_Identity=62.5925925925926, Blast_Score=315, Evalue=2e-87,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 28718; Mature: 28587

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDLQATIEKAWENRTEVTPGSREVAEAVEQAIAMIDDGSARVAQPDGAGGWQVNQWLK
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH
KAVLLSFRLRENAIMEGAVAAPAFDKVPSKFEGWDEARFREAGFRVVPGAIARRGSYIGK
HHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHCCCEECCHHHHHCCCCCCC
GAVLMPSFVNIGAYVGEGTMIDTWASVGSCAQVGTNCHISAGAGIGGVLEPLQANPTIIG
CCEECCHHHHHCEEECCCCEEEHHHHHCHHHHCCCCEEEECCCCCCHHHCCCCCCCEEEC
DNCFIGARSEIVEGVIVGEGSVVAMGVFITQSTKIVYRDSGEVIRGQIPPYSVVVPGTLP
CCEEECCHHHHHCEEEECCCCEEEEEEEEECCEEEEEECCCCEEECCCCCEEEEECCCCC
DPKGGPSLACAVIVKTVDAQTREKTGINDLLRD
CCCCCCHHHHHHHHHHHCCHHHHHCCHHHHHCC
>Mature Secondary Structure 
TSDLQATIEKAWENRTEVTPGSREVAEAVEQAIAMIDDGSARVAQPDGAGGWQVNQWLK
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH
KAVLLSFRLRENAIMEGAVAAPAFDKVPSKFEGWDEARFREAGFRVVPGAIARRGSYIGK
HHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHCCCEECCHHHHHCCCCCCC
GAVLMPSFVNIGAYVGEGTMIDTWASVGSCAQVGTNCHISAGAGIGGVLEPLQANPTIIG
CCEECCHHHHHCEEECCCCEEEHHHHHCHHHHCCCCEEEECCCCCCHHHCCCCCCCEEEC
DNCFIGARSEIVEGVIVGEGSVVAMGVFITQSTKIVYRDSGEVIRGQIPPYSVVVPGTLP
CCEEECCHHHHHCEEEECCCCEEEEEEEEECCEEEEEECCCCEEECCCCCEEEEECCCCC
DPKGGPSLACAVIVKTVDAQTREKTGINDLLRD
CCCCCCHHHHHHHHHHHCCHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA