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The map label for this gene is radC [C]

Identifier: 85374339

GI number: 85374339

Start: 1565832

End: 1566542

Strand: Direct

Name: radC [C]

Synonym: ELI_07560

Alternate gene names: 85374339

Gene position: 1565832-1566542 (Clockwise)

Preceding gene: 85374330

Following gene: 85374340

Centisome position: 51.3

GC content: 67.51

Gene sequence:

>711_bases
TTGCCGCAGGCCGAGGACGAGTATTCGGCGCCGAAGAACGCGCATTACGGCACGGGGCACCGCGCCCGGCTGCGCGAGCG
CCTGCTCAACGGCGGAGCCGAGGCGCTCGCCGACTACGAAGTGCTCGAGTACCTGCTCTTCGCCGCTTTCCGGCAGGGGG
ACACCAAGCCGATCGCCAAGGCGCTGATCGCACGCTTCGGCTCGCTCGCAGGCGTTCTGAACGCCGAGCCGGGCGCGCTG
GCCGAAGTCAAAGGCGTGGGCGAGGCCAGCGCCGCAGCGCTGAAAGCCGTCGCCCTCGCCGCCCGCCGCATGGCCCGCAA
CGAAGTGCAGCAGAAGCCGATACTCGGCAGTTGGCAGGCATTGCTCGACTATCTCACCGTCGACATGGCGCACCTGACCG
TGGAGCGCGTGCGCGTGCTCTATCTCAATGCGCAGAACCGGCTGATCCAGGACCATCACGTCGGCGACGGCTCCATCGAC
GAAGCCGCGATCCACCCGCGTGAGGTGATCAAACGCGGCCTCGACATCGGCGCGACCGCGCTGATTCTCGTGCACAACCA
CCCGAGCGGCAATCCGGAGCCGAGCCGCGCCGATGTGCAGATCACCACCCGCATCGCCGAAGCGGGCAGATTGCTGGGGA
TTACCGTCCACGATCACGTCATCGTCGGGCGCGAGGGGCACGTGAGCCTCAGGGCGAAAGGCTTGATCTGA

Upstream 100 bases:

>100_bases
CTCGCCCTCTCCCATCACCGCTCCACTTGCGCGCATCGCCCGGTAAAGGCAATGCTCCGAATAGCTTGGAGATGTAACGC
TTGAACGAGCGGAGGGTTGC

Downstream 100 bases:

>100_bases
GCGACACCGCAGCCTAGCCGCCGCGCGACAGTTTCAAACCCTTTTTCCCGGAGTCGACCGATGGTCCCCCGCTATGCCCG
CCCCGCCATGACCGCCCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MPQAEDEYSAPKNAHYGTGHRARLRERLLNGGAEALADYEVLEYLLFAAFRQGDTKPIAKALIARFGSLAGVLNAEPGAL
AEVKGVGEASAAALKAVALAARRMARNEVQQKPILGSWQALLDYLTVDMAHLTVERVRVLYLNAQNRLIQDHHVGDGSID
EAAIHPREVIKRGLDIGATALILVHNHPSGNPEPSRADVQITTRIAEAGRLLGITVHDHVIVGREGHVSLRAKGLI

Sequences:

>Translated_236_residues
MPQAEDEYSAPKNAHYGTGHRARLRERLLNGGAEALADYEVLEYLLFAAFRQGDTKPIAKALIARFGSLAGVLNAEPGAL
AEVKGVGEASAAALKAVALAARRMARNEVQQKPILGSWQALLDYLTVDMAHLTVERVRVLYLNAQNRLIQDHHVGDGSID
EAAIHPREVIKRGLDIGATALILVHNHPSGNPEPSRADVQITTRIAEAGRLLGITVHDHVIVGREGHVSLRAKGLI
>Mature_235_residues
PQAEDEYSAPKNAHYGTGHRARLRERLLNGGAEALADYEVLEYLLFAAFRQGDTKPIAKALIARFGSLAGVLNAEPGALA
EVKGVGEASAAALKAVALAARRMARNEVQQKPILGSWQALLDYLTVDMAHLTVERVRVLYLNAQNRLIQDHHVGDGSIDE
AAIHPREVIKRGLDIGATALILVHNHPSGNPEPSRADVQITTRIAEAGRLLGITVHDHVIVGREGHVSLRAKGLI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=212, Percent_Identity=36.3207547169811, Blast_Score=143, Evalue=8e-36,
Organism=Escherichia coli, GI1788997, Length=122, Percent_Identity=46.7213114754098, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI2367100, Length=150, Percent_Identity=38.6666666666667, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1788312, Length=122, Percent_Identity=45.9016393442623, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25463; Mature: 25332

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQAEDEYSAPKNAHYGTGHRARLRERLLNGGAEALADYEVLEYLLFAAFRQGDTKPIAK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ALIARFGSLAGVLNAEPGALAEVKGVGEASAAALKAVALAARRMARNEVQQKPILGSWQA
HHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LLDYLTVDMAHLTVERVRVLYLNAQNRLIQDHHVGDGSIDEAAIHPREVIKRGLDIGATA
HHHHHHHHHHHHHHHHHHEEEECCCCCCHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCEE
LILVHNHPSGNPEPSRADVQITTRIAEAGRLLGITVHDHVIVGREGHVSLRAKGLI
EEEEECCCCCCCCCCCCCEEEHHHHHHCCCEEEEEEECEEEECCCCCEEEEECCCC
>Mature Secondary Structure 
PQAEDEYSAPKNAHYGTGHRARLRERLLNGGAEALADYEVLEYLLFAAFRQGDTKPIAK
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ALIARFGSLAGVLNAEPGALAEVKGVGEASAAALKAVALAARRMARNEVQQKPILGSWQA
HHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LLDYLTVDMAHLTVERVRVLYLNAQNRLIQDHHVGDGSIDEAAIHPREVIKRGLDIGATA
HHHHHHHHHHHHHHHHHHEEEECCCCCCHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCEE
LILVHNHPSGNPEPSRADVQITTRIAEAGRLLGITVHDHVIVGREGHVSLRAKGLI
EEEEECCCCCCCCCCCCCEEEHHHHHHCCCEEEEEEECEEEECCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA