Click here to switch to the map view.

The map label for this gene is yrbE [C]

Identifier: 85373087

GI number: 85373087

Start: 299921

End: 301033

Strand: Direct

Name: yrbE [C]

Synonym: ELI_01300

Alternate gene names: 85373087

Gene position: 299921-301033 (Clockwise)

Preceding gene: 85373082

Following gene: 85373088

Centisome position: 9.83

GC content: 64.96

Gene sequence:

>1113_bases
ATGTCGGAAGGGGCAAGCTTTTCACTGCAGGAGCAGGACGACGGCACCACGGTGCTGCGGCTGGCAGGTCCCTATCTCGT
CTCCACCATCGGCCCGATCGACCAGGACCTGCGCGCGCTCGAAGGCGGCTTTTCCGCCGTCGACCTGGGCGACGTTTCGC
AGATCGACACGGTCGGGGCCTGGATGGCCTGCACTGTCGCCGGTGCCCACGATGCCGAAATCCGCAATGCCAGCGATCGA
GCCTCGCGGCTGATCGATGCGGTGCAGGGCAGCATCAACAAGGCCGAAACAACGCCGGAGCGCGACCCGCTGTTCCGCCG
GGTCGCCATGATGACCGGCGAGCGGGTGGTGGAGTTCGGGCACAATCTGCTCGACCTGCTCAGCTTCGCCGGCGCGATCG
TCGCGGGTTTCGGCCGCCTGCTGCTCCATCCCGGCCGTTTCCCGCACAAGGCGCTGTTCCGCCAGCTGGAACTGGTCGGC
ATCAACGCGCTGCCGATCATCGGCCTGATGAGCTTTCTGATCGGGATCGTCATCGCCCAGCAAGGCGCGGTGCAGCTCGA
ACAGTTCGGGGCGGAAACGCTGACAGTCAATCTCGTCGGCCGCATCACCATGCGCGAACTGGGCGTACTGATGACGGCCA
TTATGGTCGCGGGCCGGTCCGGCAGCGCCTTTGCCGCGCAGATCGGGACGATGAAACTGACCGAGGAAGTCGACGCCATG
CGCACGATCGGCATTTCCCCGGTCGAAGCGCTGGTGCTCCCGCGCATTCTCGCCGCCGTGCTGATGATGCCGCTGCTCGG
CTTCTATTCCGCCTGTGTCGCTATCGTGGGCGGTGCGGTTGTCTCCGAATTCGCGCTTGGCATCCCGTTCTGGAACTTCC
TCGAACGCATCCAGGACGTTGTGCCGACCTACGACCTGTGGGTCGGGCTCATCAAAGCGCCGGTCTTCGGCCTGATCGTC
GCGCTCGCCGGCTGCTACCAGGGCATGCAGGTGCGCGGCAATTCGGAAGAGGTCGGCAGCCGCACGACCAAGGCGGTGGT
GCAGGCGATCTTCATGGTCATCGTTCTCGATGCCTTCTTCGCCGTCTTCTTCACCGAGATCGGGTGGGGCTGA

Upstream 100 bases:

>100_bases
GTGCTCATGCGGCGAGGCATTGCCAGCGCGATTTGTGCATTGCAACGAAAAGCCGATAGCGTCTTGTTTGGCCAGCGATT
TGCCCGCATAGGTTGCCGCG

Downstream 100 bases:

>100_bases
ATGTCGGACGCAGCCTATCATCACGATACGCCGATCAGCGTGCGCGGTCTGAAGAACCAGTTCGGCAGCACCGTCGTGCA
CGAGGATCTCGACCTCGACG

Product: ABC-type transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MSEGASFSLQEQDDGTTVLRLAGPYLVSTIGPIDQDLRALEGGFSAVDLGDVSQIDTVGAWMACTVAGAHDAEIRNASDR
ASRLIDAVQGSINKAETTPERDPLFRRVAMMTGERVVEFGHNLLDLLSFAGAIVAGFGRLLLHPGRFPHKALFRQLELVG
INALPIIGLMSFLIGIVIAQQGAVQLEQFGAETLTVNLVGRITMRELGVLMTAIMVAGRSGSAFAAQIGTMKLTEEVDAM
RTIGISPVEALVLPRILAAVLMMPLLGFYSACVAIVGGAVVSEFALGIPFWNFLERIQDVVPTYDLWVGLIKAPVFGLIV
ALAGCYQGMQVRGNSEEVGSRTTKAVVQAIFMVIVLDAFFAVFFTEIGWG

Sequences:

>Translated_370_residues
MSEGASFSLQEQDDGTTVLRLAGPYLVSTIGPIDQDLRALEGGFSAVDLGDVSQIDTVGAWMACTVAGAHDAEIRNASDR
ASRLIDAVQGSINKAETTPERDPLFRRVAMMTGERVVEFGHNLLDLLSFAGAIVAGFGRLLLHPGRFPHKALFRQLELVG
INALPIIGLMSFLIGIVIAQQGAVQLEQFGAETLTVNLVGRITMRELGVLMTAIMVAGRSGSAFAAQIGTMKLTEEVDAM
RTIGISPVEALVLPRILAAVLMMPLLGFYSACVAIVGGAVVSEFALGIPFWNFLERIQDVVPTYDLWVGLIKAPVFGLIV
ALAGCYQGMQVRGNSEEVGSRTTKAVVQAIFMVIVLDAFFAVFFTEIGWG
>Mature_369_residues
SEGASFSLQEQDDGTTVLRLAGPYLVSTIGPIDQDLRALEGGFSAVDLGDVSQIDTVGAWMACTVAGAHDAEIRNASDRA
SRLIDAVQGSINKAETTPERDPLFRRVAMMTGERVVEFGHNLLDLLSFAGAIVAGFGRLLLHPGRFPHKALFRQLELVGI
NALPIIGLMSFLIGIVIAQQGAVQLEQFGAETLTVNLVGRITMRELGVLMTAIMVAGRSGSAFAAQIGTMKLTEEVDAMR
TIGISPVEALVLPRILAAVLMMPLLGFYSACVAIVGGAVVSEFALGIPFWNFLERIQDVVPTYDLWVGLIKAPVFGLIVA
LAGCYQGMQVRGNSEEVGSRTTKAVVQAIFMVIVLDAFFAVFFTEIGWG

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=245, Percent_Identity=33.0612244897959, Blast_Score=102, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 39534; Mature: 39403

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEGASFSLQEQDDGTTVLRLAGPYLVSTIGPIDQDLRALEGGFSAVDLGDVSQIDTVGA
CCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCHHHHHHHHCCCCEECCCCCHHHHHHHH
WMACTVAGAHDAEIRNASDRASRLIDAVQGSINKAETTPERDPLFRRVAMMTGERVVEFG
HHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HNLLDLLSFAGAIVAGFGRLLLHPGRFPHKALFRQLELVGINALPIIGLMSFLIGIVIAQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
QGAVQLEQFGAETLTVNLVGRITMRELGVLMTAIMVAGRSGSAFAAQIGTMKLTEEVDAM
CCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHH
RTIGISPVEALVLPRILAAVLMMPLLGFYSACVAIVGGAVVSEFALGIPFWNFLERIQDV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VPTYDLWVGLIKAPVFGLIVALAGCYQGMQVRGNSEEVGSRTTKAVVQAIFMVIVLDAFF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AVFFTEIGWG
HHHHHHHCCC
>Mature Secondary Structure 
SEGASFSLQEQDDGTTVLRLAGPYLVSTIGPIDQDLRALEGGFSAVDLGDVSQIDTVGA
CCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCHHHHHHHHCCCCEECCCCCHHHHHHHH
WMACTVAGAHDAEIRNASDRASRLIDAVQGSINKAETTPERDPLFRRVAMMTGERVVEFG
HHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HNLLDLLSFAGAIVAGFGRLLLHPGRFPHKALFRQLELVGINALPIIGLMSFLIGIVIAQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
QGAVQLEQFGAETLTVNLVGRITMRELGVLMTAIMVAGRSGSAFAAQIGTMKLTEEVDAM
CCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHH
RTIGISPVEALVLPRILAAVLMMPLLGFYSACVAIVGGAVVSEFALGIPFWNFLERIQDV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VPTYDLWVGLIKAPVFGLIVALAGCYQGMQVRGNSEEVGSRTTKAVVQAIFMVIVLDAFF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AVFFTEIGWG
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]