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The map label for this gene is ybiA [H]

Identifier: 85372984

GI number: 85372984

Start: 192900

End: 193385

Strand: Direct

Name: ybiA [H]

Synonym: ELI_00785

Alternate gene names: 85372984

Gene position: 192900-193385 (Clockwise)

Preceding gene: 85372983

Following gene: 85372994

Centisome position: 6.32

GC content: 59.05

Gene sequence:

>486_bases
ATGATCGATGAAATCCGCTTCTATCGGGCGAGCGAAAAACCCTACGGTGCCTTTAGCAATCTCTACCGCCGGCCCATCGA
GTTCGAAGGCGAAGTTTTCGCCACCAGCGAGCACGCCTACCAGGCTGGGAAGGCCCGTAAGCCCGAGGTTCGCAAATGGC
TCTTGGCGGCACCGTCACCAGCGCTCCTCGCAATGGCGGCTCATGGCCTGTACTACTGGGACATCGCCCCCGGTTGGTCG
AAGACCAAGTTCGATCGTATGCGCGAGGTGCTCCGCGCAAAATTTACGCAGCATTCTGACCTGCAGGACCTGCTTCTTTC
GACGGGTGAGGCAAGACTGGTGGAGTCTGCGACCGTAGACAACGAGGTTAACCGACTATGGGGCGAGGTCAACGGCTCCG
GCAGGAACATGCTTGGCATATTGCTGATGGAGATCCGCGAGGATCTGCGGTTAGAATCCGCGGGCTACTTGGAGGCGGCC
GAGTAG

Upstream 100 bases:

>100_bases
CTATCTGGCGCTTTAGCGCTTTCAATTCAGAAGGGGTTGATTCCATGCAAATCTGCATGTATGAAATCATGCGAATTTGC
AAGACAGAAAGGCATTCGCA

Downstream 100 bases:

>100_bases
CGGTCAGGGCATTCCCGCAGCACTTCGCGAGCGTAGGCCGGCCCGCATTGCTTAAACAGGCCGCGAGCGCCGGCAAAGGC
ACAGTTCTCGGCTGCAAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MIDEIRFYRASEKPYGAFSNLYRRPIEFEGEVFATSEHAYQAGKARKPEVRKWLLAAPSPALLAMAAHGLYYWDIAPGWS
KTKFDRMREVLRAKFTQHSDLQDLLLSTGEARLVESATVDNEVNRLWGEVNGSGRNMLGILLMEIREDLRLESAGYLEAA
E

Sequences:

>Translated_161_residues
MIDEIRFYRASEKPYGAFSNLYRRPIEFEGEVFATSEHAYQAGKARKPEVRKWLLAAPSPALLAMAAHGLYYWDIAPGWS
KTKFDRMREVLRAKFTQHSDLQDLLLSTGEARLVESATVDNEVNRLWGEVNGSGRNMLGILLMEIREDLRLESAGYLEAA
E
>Mature_161_residues
MIDEIRFYRASEKPYGAFSNLYRRPIEFEGEVFATSEHAYQAGKARKPEVRKWLLAAPSPALLAMAAHGLYYWDIAPGWS
KTKFDRMREVLRAKFTQHSDLQDLLLSTGEARLVESATVDNEVNRLWGEVNGSGRNMLGILLMEIREDLRLESAGYLEAA
E

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=149, Percent_Identity=39.5973154362416, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 18355; Mature: 18355

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDEIRFYRASEKPYGAFSNLYRRPIEFEGEVFATSEHAYQAGKARKPEVRKWLLAAPSP
CCCCCCEEECCCCCCHHHHHHHCCCCCCCCCEEECCHHHHHCCCCCCHHHHHHHHCCCCH
ALLAMAAHGLYYWDIAPGWSKTKFDRMREVLRAKFTQHSDLQDLLLSTGEARLVESATVD
HHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHH
NEVNRLWGEVNGSGRNMLGILLMEIREDLRLESAGYLEAAE
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCC
>Mature Secondary Structure
MIDEIRFYRASEKPYGAFSNLYRRPIEFEGEVFATSEHAYQAGKARKPEVRKWLLAAPSP
CCCCCCEEECCCCCCHHHHHHHCCCCCCCCCEEECCHHHHHCCCCCCHHHHHHHHCCCCH
ALLAMAAHGLYYWDIAPGWSKTKFDRMREVLRAKFTQHSDLQDLLLSTGEARLVESATVD
HHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHH
NEVNRLWGEVNGSGRNMLGILLMEIREDLRLESAGYLEAAE
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]