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The map label for this gene is yvoA [H]

Identifier: 84625356

GI number: 84625356

Start: 4178615

End: 4179382

Strand: Reverse

Name: yvoA [H]

Synonym: XOO_3699

Alternate gene names: 84625356

Gene position: 4179382-4178615 (Counterclockwise)

Preceding gene: 84625357

Following gene: 84625355

Centisome position: 84.6

GC content: 65.76

Gene sequence:

>768_bases
ATGGCCAAACCGAGAACCAACGCCAGGACGGACGACGACCCCAGGGTGGAGGCGCTGGCGCTGGATGTTTCTGCGCCGAC
CCCGCTGTATCTGCAATTGGCCACCAAGCTCACCGACGCCATCCGTGGCGGGCAGTGGAAGGCCGGCGAGGCGCTGCCGG
CCGAGCGCCAGCTGTGCGAGCGGCTGCAAATCTCGCGGGTCACCCTGCGCCAAGCGGTGGATGTGCTGGTCGAACAATGC
CTGGTCTCGCGCCGGCAGGGCGCCGGCACCTTTGTCACCACGCAGATCCAGCACCAGCTCAGCGGGCTGGCCAGTTTCAG
CGAAACGCTGCGCATCAAGGGCTATGAGCCCGGCACGCGCTGGCTGGAGCGGCGGCTGCGACCGGCACATGGCGAAGAGA
TCTTGCGGCTGGGCTTGTCGCCGGATGCGGCAGTGGCCTCGCTCACGCGTTTGCGCAGCGCCGACGACCGCGTCATGGCC
TACGAACATGCGGTGTTGCCGCAACGCATCGTCGCCGACCCGCAGCACATCGGCGATTCGCTTTACAGCTATCTGGATGC
GCAGGGCACGCCGGTGGTGCGCGCGTTGCAATATTTCCGCGCCATCAATCTGCCGGCGCGGTTGGCCGAACACCTGCGTA
TGAAAACCGGCGAGGCGATTTTGCACGTGGTGCGCGTGGGCTATGCCCGCGACGGCAGCGCGATCGAATTGACCGACACC
TATTGCCACAACGATTTCTACGATTTCGTCGCCGAACTGCGCCGCTGA

Upstream 100 bases:

>100_bases
GTTGCTGCGCGCTTTCGGGGGCGAGTACGGCCTGGTGCATGCGGGCCAAATTGGTACTATATTGGATCTAACAAATCCAC
GTCGGTCCGGAGGACAGGCA

Downstream 100 bases:

>100_bases
CGCCGACGGCATTCCTTACGGTAACCTATAGAGCCAGCTGATCCATGACTACCGCCAGGCCTGCAAATCCCGTTGTCTCG
ATCGCCATCGTCGGCGTACT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MAKPRTNARTDDDPRVEALALDVSAPTPLYLQLATKLTDAIRGGQWKAGEALPAERQLCERLQISRVTLRQAVDVLVEQC
LVSRRQGAGTFVTTQIQHQLSGLASFSETLRIKGYEPGTRWLERRLRPAHGEEILRLGLSPDAAVASLTRLRSADDRVMA
YEHAVLPQRIVADPQHIGDSLYSYLDAQGTPVVRALQYFRAINLPARLAEHLRMKTGEAILHVVRVGYARDGSAIELTDT
YCHNDFYDFVAELRR

Sequences:

>Translated_255_residues
MAKPRTNARTDDDPRVEALALDVSAPTPLYLQLATKLTDAIRGGQWKAGEALPAERQLCERLQISRVTLRQAVDVLVEQC
LVSRRQGAGTFVTTQIQHQLSGLASFSETLRIKGYEPGTRWLERRLRPAHGEEILRLGLSPDAAVASLTRLRSADDRVMA
YEHAVLPQRIVADPQHIGDSLYSYLDAQGTPVVRALQYFRAINLPARLAEHLRMKTGEAILHVVRVGYARDGSAIELTDT
YCHNDFYDFVAELRR
>Mature_254_residues
AKPRTNARTDDDPRVEALALDVSAPTPLYLQLATKLTDAIRGGQWKAGEALPAERQLCERLQISRVTLRQAVDVLVEQCL
VSRRQGAGTFVTTQIQHQLSGLASFSETLRIKGYEPGTRWLERRLRPAHGEEILRLGLSPDAAVASLTRLRSADDRVMAY
EHAVLPQRIVADPQHIGDSLYSYLDAQGTPVVRALQYFRAINLPARLAEHLRMKTGEAILHVVRVGYARDGSAIELTDTY
CHNDFYDFVAELRR

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=226, Percent_Identity=28.7610619469027, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1786950, Length=226, Percent_Identity=29.2035398230088, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790540, Length=236, Percent_Identity=30.9322033898305, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082252, Length=219, Percent_Identity=23.2876712328767, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1790118, Length=231, Percent_Identity=22.5108225108225, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28540; Mature: 28409

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPRTNARTDDDPRVEALALDVSAPTPLYLQLATKLTDAIRGGQWKAGEALPAERQLCE
CCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
RLQISRVTLRQAVDVLVEQCLVSRRQGAGTFVTTQIQHQLSGLASFSETLRIKGYEPGTR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCHHH
WLERRLRPAHGEEILRLGLSPDAAVASLTRLRSADDRVMAYEHAVLPQRIVADPQHIGDS
HHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHH
LYSYLDAQGTPVVRALQYFRAINLPARLAEHLRMKTGEAILHVVRVGYARDGSAIELTDT
HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHH
YCHNDFYDFVAELRR
HHHCHHHHHHHHHCC
>Mature Secondary Structure 
AKPRTNARTDDDPRVEALALDVSAPTPLYLQLATKLTDAIRGGQWKAGEALPAERQLCE
CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
RLQISRVTLRQAVDVLVEQCLVSRRQGAGTFVTTQIQHQLSGLASFSETLRIKGYEPGTR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCHHH
WLERRLRPAHGEEILRLGLSPDAAVASLTRLRSADDRVMAYEHAVLPQRIVADPQHIGDS
HHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHH
LYSYLDAQGTPVVRALQYFRAINLPARLAEHLRMKTGEAILHVVRVGYARDGSAIELTDT
HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHH
YCHNDFYDFVAELRR
HHHCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]