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The map label for this gene is atpD [H]

Identifier: 84622325

GI number: 84622325

Start: 719682

End: 721088

Strand: Direct

Name: atpD [H]

Synonym: XOO_0668

Alternate gene names: 84622325

Gene position: 719682-721088 (Clockwise)

Preceding gene: 84622324

Following gene: 84622326

Centisome position: 14.57

GC content: 63.11

Gene sequence:

>1407_bases
ATGAGTCAGGGCAAGATCGTTCAGATCATCGGCGCGGTCGTCGACGTCGAATTCCCGCGCAATGAAGTGCCGAAGGTGTA
TCACGCGCTGAAGGTCGAAGGCACCGAAATCACCCTGGAAGTGCAGCAGCAGCTCGGCGACGGCGTCGTGCGCACGATTG
CGCTCGGCTCCACCGACGGCTTGAAGCGCAACCTGCTGGCCACCAACACCGAGCGCGCCATCTCGGTGCCGGTCGGTGCC
GGTACGCTGGGCCGCATCATGGACGTGCTGGGTCGTCCGATCGACGAAGCCGGCGACGTGCAGGCGTCGGACCATTGGGA
AATCCATCGCGGCGCACCGTCGTACGAAGACCAGTCCTCCAGCACCGAATTGCTGGAAACCGGCATCAAGGTCATCGACC
TGATGTGCCCGTTCGCCAAGGGCGGCAAGGTCGGCCTGTTCGGCGGCGCCGGCGTCGGCAAGACCGTCAACATGATGGAA
CTGATCAACAACATCGCCAAGGCGCACAGCGGCTTGTCCGTGTTCGCCGGCGTGGGCGAGCGTACCCGCGAGGGCAACGA
CTTCTACCACGAGATGAAGGACTCCAACGTTCTGGACAAGGTCGCGATGGTGTACGGCCAGATGAACGAGCCGCCGGGCA
ACCGTCTGCGCGTTGCGCTGACCGGCCTGACCATGGCCGAGTACTTCCGCGACGAGAAGGACGCCAACGGCAAGGGCAAG
GACGTGCTGCTGTTCGTGGACAACATTTACCGCTACACGCTGGCCGGTACCGAAGTGTCCGCGCTGCTCGGCCGTATGCC
GTCGGCCGTGGGTTACCAGCCCACTCTGGCCGAAGAAATGGGCGTGCTGCAGGAACGCATCACCTCGACCAAGAGCGGTT
CGATCACCTCGATCCAGGCCGTGTACGTGCCTGCGGACGACCTGACCGACCCGTCGCCGGCGACCACCTTCGCCCACTTG
GACTCGACCGTCACGCTGAGCCGTAACATCGCTTCGCTGGGTATCTACCCGGCTGTGGATCCGCTGGACTCCACCAGCCG
CCAGATGGACCCGCTGGTGATCGGCCACGAGCATTACGACACCGCCCAGCGCGTCCAGCAGACCTTGCAGAAGTACAAGG
AACTGAAGGACATCATCGCCATCCTGGGCATGGACGAGCTGAGCGAAGAAGACAAGCAGTCGGTGTCGCGCGCACGCAAG
ATCGAGCGCTTCTTCAGCCAGCCCTTCCACGTGGCCGAAGTGTTCACCGGCTCCCCGGGCAAGTACGTCTCGCTGAAGGA
CACCATCCGCGGCTTCAAGGCGATCTGCGACGGCGAATACGACCACCTACCGGAGCAGGCGTTCTACATGGTCGGCAGCA
TCGAAGAAGCCGTCGAGAAAGCCAACAAGATGAGCGCCAAGGCGTAA

Upstream 100 bases:

>100_bases
ATTGCGCCCTTGCGAATCCCCACTCACGAATCCCAAATCACAAAATTCCACGAGATGGCATCGGCCACTCGGACAGAACA
AAGCTAACCGGAGCAGCAAA

Downstream 100 bases:

>100_bases
GAGCCGGAATTTGGCATTGGGGATTTGGGATTAGGTACGGCGGTAATTGGGGAGCGGAAACGAGGTAAGTGACCACAGTG
AAAGCTGCGGTTGCGAATCC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSQGKIVQIIGAVVDVEFPRNEVPKVYHALKVEGTEITLEVQQQLGDGVVRTIALGSTDGLKRNLLATNTERAISVPVGA
GTLGRIMDVLGRPIDEAGDVQASDHWEIHRGAPSYEDQSSSTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDANGKGK
DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFAHL
DSTVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYDTAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARK
IERFFSQPFHVAEVFTGSPGKYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA

Sequences:

>Translated_468_residues
MSQGKIVQIIGAVVDVEFPRNEVPKVYHALKVEGTEITLEVQQQLGDGVVRTIALGSTDGLKRNLLATNTERAISVPVGA
GTLGRIMDVLGRPIDEAGDVQASDHWEIHRGAPSYEDQSSSTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDANGKGK
DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFAHL
DSTVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYDTAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARK
IERFFSQPFHVAEVFTGSPGKYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA
>Mature_467_residues
SQGKIVQIIGAVVDVEFPRNEVPKVYHALKVEGTEITLEVQQQLGDGVVRTIALGSTDGLKRNLLATNTERAISVPVGAG
TLGRIMDVLGRPIDEAGDVQASDHWEIHRGAPSYEDQSSSTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMEL
INNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDANGKGKD
VLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFAHLD
STVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYDTAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARKI
ERFFSQPFHVAEVFTGSPGKYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=472, Percent_Identity=66.5254237288136, Blast_Score=634, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=327, Percent_Identity=27.217125382263, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI19913428, Length=424, Percent_Identity=24.7641509433962, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI19913426, Length=410, Percent_Identity=23.9024390243902, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI50345984, Length=369, Percent_Identity=23.3062330623306, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI4757810, Length=369, Percent_Identity=23.3062330623306, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=80.6866952789699, Blast_Score=766, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=322, Percent_Identity=28.5714285714286, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790172, Length=388, Percent_Identity=23.7113402061856, Blast_Score=106, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI25144756, Length=474, Percent_Identity=64.3459915611814, Blast_Score=613, Evalue=1e-176,
Organism=Caenorhabditis elegans, GI17565854, Length=330, Percent_Identity=27.5757575757576, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17510931, Length=344, Percent_Identity=26.1627906976744, Blast_Score=115, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=407, Percent_Identity=24.5700245700246, Blast_Score=111, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI71988080, Length=327, Percent_Identity=23.5474006116208, Blast_Score=95, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI71988063, Length=327, Percent_Identity=23.5474006116208, Blast_Score=95, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=352, Percent_Identity=23.0113636363636, Blast_Score=77, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=462, Percent_Identity=65.1515151515152, Blast_Score=621, Evalue=1e-179,
Organism=Saccharomyces cerevisiae, GI6319603, Length=408, Percent_Identity=27.2058823529412, Blast_Score=122, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6319370, Length=395, Percent_Identity=25.0632911392405, Blast_Score=104, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=238, Percent_Identity=25.6302521008403, Blast_Score=80, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24638766, Length=474, Percent_Identity=65.4008438818565, Blast_Score=618, Evalue=1e-177,
Organism=Drosophila melanogaster, GI28574560, Length=473, Percent_Identity=61.3107822410148, Blast_Score=578, Evalue=1e-165,
Organism=Drosophila melanogaster, GI20129479, Length=326, Percent_Identity=27.3006134969325, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24583992, Length=329, Percent_Identity=26.7477203647416, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI281361666, Length=400, Percent_Identity=24.75, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24646341, Length=400, Percent_Identity=24.75, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI17136796, Length=400, Percent_Identity=24.75, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24583988, Length=329, Percent_Identity=26.7477203647416, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583986, Length=329, Percent_Identity=26.7477203647416, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583984, Length=329, Percent_Identity=26.7477203647416, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24658560, Length=309, Percent_Identity=24.5954692556634, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=48.9130434782609, Blast_Score=79, Evalue=9e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50952; Mature: 50821

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQGKIVQIIGAVVDVEFPRNEVPKVYHALKVEGTEITLEVQQQLGDGVVRTIALGSTDG
CCCCCEEHEEHHHHCCCCCCCCHHHHHHHHEECCCEEEEEEHHHHCCCCEEEEEECCCCC
LKRNLLATNTERAISVPVGAGTLGRIMDVLGRPIDEAGDVQASDHWEIHRGAPSYEDQSS
CHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
STELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC
RTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDANGKGK
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCC
DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQA
EEEEEEECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
VYVPADDLTDPSPATTFAHLDSTVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYD
EEECCCCCCCCCCCCHHHHCCCEEEECCCHHHHCCCCCCCCCCCCHHCCCCEEECCCCCC
TAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARKIERFFSQPFHVAEVFTGSPG
HHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCCEEEHEEECCCC
KYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA
CEEEHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQGKIVQIIGAVVDVEFPRNEVPKVYHALKVEGTEITLEVQQQLGDGVVRTIALGSTDG
CCCCEEHEEHHHHCCCCCCCCHHHHHHHHEECCCEEEEEEHHHHCCCCEEEEEECCCCC
LKRNLLATNTERAISVPVGAGTLGRIMDVLGRPIDEAGDVQASDHWEIHRGAPSYEDQSS
CHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
STELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC
RTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDANGKGK
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCC
DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQA
EEEEEEECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
VYVPADDLTDPSPATTFAHLDSTVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYD
EEECCCCCCCCCCCCHHHHCCCEEEECCCHHHHCCCCCCCCCCCCHHCCCCEEECCCCCC
TAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARKIERFFSQPFHVAEVFTGSPG
HHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCCEEEHEEECCCC
KYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA
CEEEHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA