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The map label for this gene is ygiD [H]

Identifier: 84622264

GI number: 84622264

Start: 658493

End: 659311

Strand: Direct

Name: ygiD [H]

Synonym: XOO_0607

Alternate gene names: 84622264

Gene position: 658493-659311 (Clockwise)

Preceding gene: 84622263

Following gene: 84622265

Centisome position: 13.33

GC content: 69.11

Gene sequence:

>819_bases
ATGACCCGCTTGCCCTCCCTGTATATCTCGCATGGTTCGCCGATGACCGCACTGCAGCCGGGGCAAGTCGGCGAGCGGCT
GGCCGACTTGCGGCAGGCGTTGCCGCGGCCGCGCGCCATTGTTGTGGCCAGCGCGCACTGGTTGGGCCGCCGTCCGCTGG
TCAGTGGCGCGGTACGGCCGCCCACCATCCACGACGTCGGGGGCTTCCCGGCACCGTTGTATGAGCTGGACTATCCGGCG
CCCGGCGAGCCGGCATTGGCGCAGCAGATCATGCGCCGGCTGGAGCAGGCCGGCCTGCATCCGCATCTGGATCCGCAGCG
CGGCTTCGACCACGGCGTCTGGGTGCCGCTGCGCCTGCTGTATCCGGACGCCGACATCCCGGTGGTGTCGCTGTCGATCC
AGCCCGAGCTTGGCCCGGCGCACCAGTTCGCGGTGGGGCGTGCGCTGGCGCCGTTGCGCGATGACGGCGTGCTGGTGATC
GGCTCGGGCAGCATCACCCATAACCTGCACGACTTTCGCCACGGCTACAGCACCGAGCGCGAAGCGCCATATGTGCGGCC
CTTCATCGAATGGACAGAGCGCACGCTGCTGGACAACGACATCCCCGCGCTGCTGGACTACCGCCGCCAGGCACCGCATG
CCGAGCGCGCGCATCCCAGCGACGAACACTTCCTGCCGTTGTATGTGGCGATGGGCGCAGCCGGCGACGACCGGCTCGGC
GCGCAGCGCATCGACGCCGGCATCGATGCGGGTTTTCTGGCGATGGATCTCTATCGCTTCGACGGCAACGCAGCGGTGGC
TGACCCGGTGGCTGCATAG

Upstream 100 bases:

>100_bases
TGATGGGCGGTGTTGCTGATCGTCCAGGCGTTGCTCGGCGACGGGGCGTTCGCGTTGAAGCCCTCGCACTGATGCTGTTT
GATCCATCAAGGAGTTGTCC

Downstream 100 bases:

>100_bases
CGCTGGAAGCCAGTGTGGGTGCTTTTAGCTCAGTGCCGATCGGTGGCCGGCGCAATCGCGCGCGTGAAGGTGGGTGTGGC
ATGCATGCCGGTGCGAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTRLPSLYISHGSPMTALQPGQVGERLADLRQALPRPRAIVVASAHWLGRRPLVSGAVRPPTIHDVGGFPAPLYELDYPA
PGEPALAQQIMRRLEQAGLHPHLDPQRGFDHGVWVPLRLLYPDADIPVVSLSIQPELGPAHQFAVGRALAPLRDDGVLVI
GSGSITHNLHDFRHGYSTEREAPYVRPFIEWTERTLLDNDIPALLDYRRQAPHAERAHPSDEHFLPLYVAMGAAGDDRLG
AQRIDAGIDAGFLAMDLYRFDGNAAVADPVAA

Sequences:

>Translated_272_residues
MTRLPSLYISHGSPMTALQPGQVGERLADLRQALPRPRAIVVASAHWLGRRPLVSGAVRPPTIHDVGGFPAPLYELDYPA
PGEPALAQQIMRRLEQAGLHPHLDPQRGFDHGVWVPLRLLYPDADIPVVSLSIQPELGPAHQFAVGRALAPLRDDGVLVI
GSGSITHNLHDFRHGYSTEREAPYVRPFIEWTERTLLDNDIPALLDYRRQAPHAERAHPSDEHFLPLYVAMGAAGDDRLG
AQRIDAGIDAGFLAMDLYRFDGNAAVADPVAA
>Mature_271_residues
TRLPSLYISHGSPMTALQPGQVGERLADLRQALPRPRAIVVASAHWLGRRPLVSGAVRPPTIHDVGGFPAPLYELDYPAP
GEPALAQQIMRRLEQAGLHPHLDPQRGFDHGVWVPLRLLYPDADIPVVSLSIQPELGPAHQFAVGRALAPLRDDGVLVIG
SGSITHNLHDFRHGYSTEREAPYVRPFIEWTERTLLDNDIPALLDYRRQAPHAERAHPSDEHFLPLYVAMGAAGDDRLGA
QRIDAGIDAGFLAMDLYRFDGNAAVADPVAA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=259, Percent_Identity=40.9266409266409, Blast_Score=169, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29777; Mature: 29646

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLPSLYISHGSPMTALQPGQVGERLADLRQALPRPRAIVVASAHWLGRRPLVSGAVRP
CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCCCCC
PTIHDVGGFPAPLYELDYPAPGEPALAQQIMRRLEQAGLHPHLDPQRGFDHGVWVPLRLL
CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
YPDADIPVVSLSIQPELGPAHQFAVGRALAPLRDDGVLVIGSGSITHNLHDFRHGYSTER
CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCCC
EAPYVRPFIEWTERTLLDNDIPALLDYRRQAPHAERAHPSDEHFLPLYVAMGAAGDDRLG
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCHHC
AQRIDAGIDAGFLAMDLYRFDGNAAVADPVAA
HHHHHCCCCCCCEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
TRLPSLYISHGSPMTALQPGQVGERLADLRQALPRPRAIVVASAHWLGRRPLVSGAVRP
CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCCCCC
PTIHDVGGFPAPLYELDYPAPGEPALAQQIMRRLEQAGLHPHLDPQRGFDHGVWVPLRLL
CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
YPDADIPVVSLSIQPELGPAHQFAVGRALAPLRDDGVLVIGSGSITHNLHDFRHGYSTER
CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCCC
EAPYVRPFIEWTERTLLDNDIPALLDYRRQAPHAERAHPSDEHFLPLYVAMGAAGDDRLG
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCHHC
AQRIDAGIDAGFLAMDLYRFDGNAAVADPVAA
HHHHHCCCCCCCEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]