Click here to switch to the map view.

The map label for this gene is ynbD [H]

Identifier: 84622167

GI number: 84622167

Start: 556480

End: 556878

Strand: Direct

Name: ynbD [H]

Synonym: XOO_0510

Alternate gene names: 84622167

Gene position: 556480-556878 (Clockwise)

Preceding gene: 84622166

Following gene: 84622172

Centisome position: 11.26

GC content: 62.91

Gene sequence:

>399_bases
ATGAGCCCAGCTGCGCGCCCGTTCGGCCGTGCCGCGCTGTGGCTGGCGTTGCTGGGGCCGTTTTTCTTCCTCAGCTATGG
ACTGGCCAATACGCTGGACGGGCGGGCAACGCAGGTGCCATCGGTGGTGTTCGGCTGGGCGCACGGCATGCCGTTCTGGC
CGTGGACCATCGTGCCGTACTGGTCGATCGATCTGTTTTACGCAGCGTCGCTTTTCGTTTGCCGCACTCGCCGCGAGCTG
GACACGCATGCGCTGCGCCTGCTCAGCGCGCAGCTGATCTGCGTGGGGTGTTTTGTGGTATTGCCCTTGCGCTACAGCTT
CGTGCGGCCACAGACCGATGGCGTGTTCGGCTGGTTGTTCGCGGTGTTATTGGGCTTCCACAAACCCTTTCCTGATTAG

Upstream 100 bases:

>100_bases
AAATGGATGCGTTGGTTGAGGCAGCGGGCTTTCGCAAGGTGGCGCAGCGCATCGATGCGTTCGGCATTTTCACCGTGTCG
ATGGCGCAGCGGATCGACGC

Downstream 100 bases:

>100_bases
CACGCACTTTCAGCGGTGAACATGGTGACATCACGCAGGGCCCGCTCGGACCACGGCTTGCTGGCGGCTGCGGCGGCCAG
CAAGCTGGGCACCAGCCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSPAARPFGRAALWLALLGPFFFLSYGLANTLDGRATQVPSVVFGWAHGMPFWPWTIVPYWSIDLFYAASLFVCRTRREL
DTHALRLLSAQLICVGCFVVLPLRYSFVRPQTDGVFGWLFAVLLGFHKPFPD

Sequences:

>Translated_132_residues
MSPAARPFGRAALWLALLGPFFFLSYGLANTLDGRATQVPSVVFGWAHGMPFWPWTIVPYWSIDLFYAASLFVCRTRREL
DTHALRLLSAQLICVGCFVVLPLRYSFVRPQTDGVFGWLFAVLLGFHKPFPD
>Mature_131_residues
SPAARPFGRAALWLALLGPFFFLSYGLANTLDGRATQVPSVVFGWAHGMPFWPWTIVPYWSIDLFYAASLFVCRTRRELD
THALRLLSAQLICVGCFVVLPLRYSFVRPQTDGVFGWLFAVLLGFHKPFPD

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein-tyrosine phosphatase family [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=125, Percent_Identity=47.2, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000387
- InterPro:   IPR000340
- InterPro:   IPR020422
- InterPro:   IPR000326
- InterPro:   IPR016130 [H]

Pfam domain/function: PF00782 DSPc; PF01569 PAP2 [H]

EC number: NA

Molecular weight: Translated: 14928; Mature: 14796

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAARPFGRAALWLALLGPFFFLSYGLANTLDGRATQVPSVVFGWAHGMPFWPWTIVPY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCCCCCCEEECHH
WSIDLFYAASLFVCRTRRELDTHALRLLSAQLICVGCFVVLPLRYSFVRPQTDGVFGWLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
AVLLGFHKPFPD
HHHHHHCCCCCC
>Mature Secondary Structure 
SPAARPFGRAALWLALLGPFFFLSYGLANTLDGRATQVPSVVFGWAHGMPFWPWTIVPY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCCCCCCEEECHH
WSIDLFYAASLFVCRTRRELDTHALRLLSAQLICVGCFVVLPLRYSFVRPQTDGVFGWLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
AVLLGFHKPFPD
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]