Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
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Accession | NC_007681 |
Length | 1,767,403 |
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The map label for this gene is 84489129
Identifier: 84489129
GI number: 84489129
Start: 365884
End: 367248
Strand: Direct
Name: 84489129
Synonym: Msp_0308
Alternate gene names: NA
Gene position: 365884-367248 (Clockwise)
Preceding gene: 84489128
Following gene: 84489131
Centisome position: 20.7
GC content: 28.57
Gene sequence:
>1365_bases ATGTCAATAGAAAAAGTTACAATACCTAGTATTTCTTCAAGTAAGATGGGTAAAGAGTTTTACACAGTCTTATCTGTTGA ACTTGGAAATACTACTATAAAATCTATTATTATTACAACTAATATTAAAACAAATAAGAGTTATGAATTAAATAAATGTG TGGATTTAACTAGAAATGTTGATAATCCTGGAGACTCTGAAGAAGTATTTGGTCATACTATTTGGAACAAACCTTTATCA GGTCAAGTTATAGAAAAAGCTGTTTCTAGAATAATAAAAAAATCACTTAGTGAAGTAGGCTTGGATGTTAGTGACTTGGA TTTTGTTGTAAGATCAACTGGTGTTGTTGCTCTTTCTTCTTTATCATATCACATGGATGTTATTATAAAGTCATTATCTA ATGGTTGTCTTAATGCTGGAATTAAACCATCACAAATGATGGCTCCCTTTTCTATTAATAACATTCCAGAACATATTCGT AAATCTTCTTTTTTTAATAATATTAAATTTGATGGATCTATTGTGGGAGTAGCTTCTCCAAAGAAAACTGGTGTTGTATC TAATGAAATGGAAAGTCAACTTGTTACTGCAGGTATTAAGCTAGCAAGTAAAAGTTCAACTGTTGATTATAGAAATCCTG TTATATCTATTGATATGGGAACAACACTTGCAGGAGAAGTAGTTGATGATTCAAAACCATATGGTAAGTTAGTATGTAAT TATATTGGATTGGCTGGTGGAATATCTGATATTATATTAAGGGGGTGTGATGTTATTGAAGATAATATGTCTACAATTGA TATTGCAAATAATCAAAATAACATTCAATTTAATGAAGATATTCTTCATAAACATACAATTAAATTACATGAATTTATTG ATATTATGAAAGTTCCCAAAAATCTTGATGAATTTGGACAAGTTATAGATTTAACATTACAAAAACAAGAAAATATCAAT ATCATTGGTTCAAGAATAAATAATTCTAAAAAACTAATAACAACATTCAACAACATAACACAAGACTATACAAATTCTGA AATTTTACTTCAAATTGATGATATGTATGCATATTTTATTAAAAGACTCATAGACCAAACAAGTAAATTAAATATAATTC AACCAAAAACAACTTTGGGAATAACAGGAAGGGCTGGAATAACTGGATACAAACCATATTTCATAGAAAAGTATCTGAAT AATAGCTTTGATAATATATTATTTACACCAGATGGACTAGCACTTGGGGCACTAATGATGGCAAGATGTATGAATTCCCT TGGAACACCTATAAATCCTGTTGGTGGAAGTAGAGGTGGTATGTGCATAATGCAACAAAGAATAAAACTTTCTAAAAAAA GATAA
Upstream 100 bases:
>100_bases ACTGCATGTGCAATGACTGATATGTTTATTGCAGAGGCTAATGAAGCTATTGGAATAAATGCTGTAGATTCTCATCCATA TAAAAATTTATTATGATACT
Downstream 100 bases:
>100_bases AAAAAGAAAAAATGATTTTAGTAGGAATGGTTATTAGCCATTTCTTCTAATCTTTGAATCCTATCTGCTGTAGATGGATG TGTTGAAAATAAGTTTTGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MSIEKVTIPSISSSKMGKEFYTVLSVELGNTTIKSIIITTNIKTNKSYELNKCVDLTRNVDNPGDSEEVFGHTIWNKPLS GQVIEKAVSRIIKKSLSEVGLDVSDLDFVVRSTGVVALSSLSYHMDVIIKSLSNGCLNAGIKPSQMMAPFSINNIPEHIR KSSFFNNIKFDGSIVGVASPKKTGVVSNEMESQLVTAGIKLASKSSTVDYRNPVISIDMGTTLAGEVVDDSKPYGKLVCN YIGLAGGISDIILRGCDVIEDNMSTIDIANNQNNIQFNEDILHKHTIKLHEFIDIMKVPKNLDEFGQVIDLTLQKQENIN IIGSRINNSKKLITTFNNITQDYTNSEILLQIDDMYAYFIKRLIDQTSKLNIIQPKTTLGITGRAGITGYKPYFIEKYLN NSFDNILFTPDGLALGALMMARCMNSLGTPINPVGGSRGGMCIMQQRIKLSKKR
Sequences:
>Translated_454_residues MSIEKVTIPSISSSKMGKEFYTVLSVELGNTTIKSIIITTNIKTNKSYELNKCVDLTRNVDNPGDSEEVFGHTIWNKPLS GQVIEKAVSRIIKKSLSEVGLDVSDLDFVVRSTGVVALSSLSYHMDVIIKSLSNGCLNAGIKPSQMMAPFSINNIPEHIR KSSFFNNIKFDGSIVGVASPKKTGVVSNEMESQLVTAGIKLASKSSTVDYRNPVISIDMGTTLAGEVVDDSKPYGKLVCN YIGLAGGISDIILRGCDVIEDNMSTIDIANNQNNIQFNEDILHKHTIKLHEFIDIMKVPKNLDEFGQVIDLTLQKQENIN IIGSRINNSKKLITTFNNITQDYTNSEILLQIDDMYAYFIKRLIDQTSKLNIIQPKTTLGITGRAGITGYKPYFIEKYLN NSFDNILFTPDGLALGALMMARCMNSLGTPINPVGGSRGGMCIMQQRIKLSKKR >Mature_453_residues SIEKVTIPSISSSKMGKEFYTVLSVELGNTTIKSIIITTNIKTNKSYELNKCVDLTRNVDNPGDSEEVFGHTIWNKPLSG QVIEKAVSRIIKKSLSEVGLDVSDLDFVVRSTGVVALSSLSYHMDVIIKSLSNGCLNAGIKPSQMMAPFSINNIPEHIRK SSFFNNIKFDGSIVGVASPKKTGVVSNEMESQLVTAGIKLASKSSTVDYRNPVISIDMGTTLAGEVVDDSKPYGKLVCNY IGLAGGISDIILRGCDVIEDNMSTIDIANNQNNIQFNEDILHKHTIKLHEFIDIMKVPKNLDEFGQVIDLTLQKQENINI IGSRINNSKKLITTFNNITQDYTNSEILLQIDDMYAYFIKRLIDQTSKLNIIQPKTTLGITGRAGITGYKPYFIEKYLNN SFDNILFTPDGLALGALMMARCMNSLGTPINPVGGSRGGMCIMQQRIKLSKKR
Specific function: Unknown
COG id: COG4065
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.thermoautotrophicum MTH1153 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008303 [H]
Pfam domain/function: PF09887 DUF2114 [H]
EC number: NA
Molecular weight: Translated: 50026; Mature: 49895
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIEKVTIPSISSSKMGKEFYTVLSVELGNTTIKSIIITTNIKTNKSYELNKCVDLTRNV CCCCEEECCCCCCHHHCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCC DNPGDSEEVFGHTIWNKPLSGQVIEKAVSRIIKKSLSEVGLDVSDLDFVVRSTGVVALSS CCCCCCHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEHH LSYHMDVIIKSLSNGCLNAGIKPSQMMAPFSINNIPEHIRKSSFFNNIKFDGSIVGVASP HHHHHHHHHHHHCCHHHCCCCCHHHEECCCCCCCCHHHHHHHHHHCCCEECCEEEEECCC KKTGVVSNEMESQLVTAGIKLASKSSTVDYRNPVISIDMGTTLAGEVVDDSKPYGKLVCN CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCHHHHHHH YIGLAGGISDIILRGCDVIEDNMSTIDIANNQNNIQFNEDILHKHTIKLHEFIDIMKVPK HHHHHCCHHHHHHHCCHHHCCCCCEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHCCC NLDEFGQVIDLTLQKQENINIIGSRINNSKKLITTFNNITQDYTNSEILLQIDDMYAYFI CHHHHHHHHHHEEECCCCCEEEEECCCCCCEEEEEHHHHHHHCCCCEEEEEEHHHHHHHH KRLIDQTSKLNIIQPKTTLGITGRAGITGYKPYFIEKYLNNSFDNILFTPDGLALGALMM HHHHCCCCCCEEECCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCEEECCCHHHHHHHHH ARCMNSLGTPINPVGGSRGGMCIMQQRIKLSKKR HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure SIEKVTIPSISSSKMGKEFYTVLSVELGNTTIKSIIITTNIKTNKSYELNKCVDLTRNV CCCEEECCCCCCHHHCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCC DNPGDSEEVFGHTIWNKPLSGQVIEKAVSRIIKKSLSEVGLDVSDLDFVVRSTGVVALSS CCCCCCHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEHH LSYHMDVIIKSLSNGCLNAGIKPSQMMAPFSINNIPEHIRKSSFFNNIKFDGSIVGVASP HHHHHHHHHHHHCCHHHCCCCCHHHEECCCCCCCCHHHHHHHHHHCCCEECCEEEEECCC KKTGVVSNEMESQLVTAGIKLASKSSTVDYRNPVISIDMGTTLAGEVVDDSKPYGKLVCN CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCHHHHHHH YIGLAGGISDIILRGCDVIEDNMSTIDIANNQNNIQFNEDILHKHTIKLHEFIDIMKVPK HHHHHCCHHHHHHHCCHHHCCCCCEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHCCC NLDEFGQVIDLTLQKQENINIIGSRINNSKKLITTFNNITQDYTNSEILLQIDDMYAYFI CHHHHHHHHHHEEECCCCCEEEEECCCCCCEEEEEHHHHHHHCCCCEEEEEEHHHHHHHH KRLIDQTSKLNIIQPKTTLGITGRAGITGYKPYFIEKYLNNSFDNILFTPDGLALGALMM HHHHCCCCCCEEECCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCEEECCCHHHHHHHHH ARCMNSLGTPINPVGGSRGGMCIMQQRIKLSKKR HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]